PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr028206.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 198aa    MW: 22242.7 Da    PI: 9.3335
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr028206.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY48.81.4e-15128175159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDg++WrKYGqK vk++ +p           +vkk+v+r ++d+++v++tYeg Hnh+
  Pbr028206.1 128 LDDGFRWRKYGQKAVKNTLCP-----------SVKKQVQRLSKDTSIVVTTYEGVHNHP 175
                  59***************9988...........69************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-18114176IPR003657WRKY domain
SuperFamilySSF1182901.23E-16120176IPR003657WRKY domain
PROSITE profilePS5081116.306123177IPR003657WRKY domain
SMARTSM007743.6E-20128176IPR003657WRKY domain
PfamPF031067.0E-11129175IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MENQYYPSPA AATSSSSPTY QFPPQNNLFT PSSSSLSINL FDNPHPPPYP HHHQVQIPPD  60
IDWISLLSGD QPAGDLLTTH NNHDQAGDRA EEIRGSNRRK GGASSRNYTR RSSRPRVAFH  120
TRSTDDILDD GFRWRKYGQK AVKNTLCPSV KKQVQRLSKD TSIVVTTYEG VHNHPSEELM  180
ETLSPLLKQM QFLSARF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-15116174271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr028206.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009337617.11e-121PREDICTED: probable WRKY transcription factor 24
SwissprotQ9FFS31e-38WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBLA0A498KPF71e-109A0A498KPF7_MALDO; Uncharacterized protein
STRINGXP_009337617.11e-121(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32273471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.12e-41WRKY DNA-binding protein 24