PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr028248.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

G2-like

Protein Properties

Length: 265aa MW: 30016.6 Da PI: 8.5646

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr028248.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.9	3.6e-31	2	55	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWt++LH rF++a+e+LGG+++AtPk +l+lm++kgL+++hvkSHLQ+YR+ Pbr028248.1 2 PRLRWTTDLHLRFIHAMERLGGQDRATPKLVLQLMNIKGLSIAHVKSHLQMYRS 55 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-27	1	56	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.895	1	58	IPR017930	Myb domain
SuperFamily	SSF46689	4.84E-14	2	56	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.0E-22	2	57	IPR006447	Myb domain, plants
Pfam	PF00249	3.3E-8	3	54	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MPRLRWTTDL HLRFIHAMER LGGQDRATPK LVLQLMNIKG LSIAHVKSHL QMYRSKKIND 60 AGQVLPDRQG HLGECGDKNI YNLSQLPMLQ GYKLYNQSHT TSFRYGSYGD ANSWNAFENP 120 GFSRCSTGFQ GNWRTSSTSN NAYNYLTSCS FGDHPQSSWI TRTLKEDCQL YNIRESLKPG 180 ELSTSFNTND GPFQDSDTVT KNLVQDQLKT LKRKASDCHD LDLDLSLKLT SRKNDEDHTH 240 EVDSSLSLCL YSPPTSSKLR SLKE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-16	3	57	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-16	3	57	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-16	3	57	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-16	3	57	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-16	3	57	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-16	3	57	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-16	3	57	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-16	3	57	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-16	3	57	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-16	3	57	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-16	3	57	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-16	3	57	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr028248.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	LM999997	8e-34	LM999997.1 Malus baccata partial kan1-like gene for putative transcription repressor KAN1-like, exons 1-4.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009337761.2	0.0	PREDICTED: transcription repressor KAN1-like
TrEMBL	A0A498II92	1e-180	A0A498II92_MALDO; Uncharacterized protein
STRING	XP_009337761.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2378	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	2e-47	G2-like family protein