PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr028256.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 196aa    MW: 21793.3 Da    PI: 8.4586
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr028256.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.61.4e-104888954
                 HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                  r RR+ri ++f  L++l+P       +Kl+ +++Le+A++Y+k L
  Pbr028256.1 48 ARERRHRISDRFKILQSLVPGG-----TKLDTVSMLEEAIHYVKFL 88
                 699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.443988IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-1344100IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.20E-144592No hitNo description
SMARTSM003531.3E-124594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-114593IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-84888IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MDYFTATNDS SSNNFSKSSS SVTKNNRGGG KNKSKGVRLS TDPQSVAARE RRHRISDRFK  60
ILQSLVPGGT KLDTVSMLEE AIHYVKFLKT QIWLHQTMIN SVDDHHDPSS SSSPSMLMDI  120
PANRHGLHPT GCFDQLPPQH HQQTHDLYAH SNFVSAAASV QPPSPAVNIP IMPEYNYFQG  180
QETLANIEAY MKYYS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr028256.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009337764.11e-146PREDICTED: transcription factor bHLH140-like
TrEMBLA0A498IE111e-125A0A498IE11_MALDO; Uncharacterized protein
STRINGXP_009337764.11e-145(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71672846
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.13e-30APRATAXIN-like