PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr028264.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 527aa MW: 57377.9 Da PI: 8.7317

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr028264.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.2e-05	87	109	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Pbr028264.1 87 FICEICNKGFQRDQNLQLHRRGH 109 89*******************88 PP
2	zf-C2H2	12.7	0.00039	163	185	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ Pbr028264.1 163 WKCDKCSKRYAVQSDWKAHSKTC 185 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.87E-7	86	109	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.4E-5	86	109	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.845	87	109	IPR007087	Zinc finger, C2H2
Pfam	PF12171	6.4E-5	87	109	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.022	87	109	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	89	109	IPR007087	Zinc finger, C2H2
SMART	SM00355	240	128	158	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.6E-4	151	184	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	8.87E-7	158	183	No hit	No description
SMART	SM00355	140	163	183	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 527 aa Download sequence Send to blast
MMLFHQQQSQ RLVDENISNL TSASGEAASA LSGNKNEIGT RFSQQFFTTP PQAQPTLKKK 60 RNLPGNPDPD AEVIALSPKT LMATNRFICE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTS 120 KEVRKKVYVC PEASCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK RYAVQSDWKA 180 HSKTCGTREY RCDCGTLFSR RDSFITHRAF CDALAEESAR AITSANHPHH LLISQQQPQM 240 NLNQVQLGHQ FNQDIHGFSL KKEQQSFTTL RPDLPPWLGP PNCTIDLSSS SSLFSPTHHQ 300 DLSLHDSHND TSQNPNPSSL PPFQPAPSPH ISATALLQKA AQMGATMSSK NSTTAATTSE 360 AAATSASPQP MVRAHQHNPG HVSDFAAAGA NAIPGTTGPA VSSVHHHHQN QHQQASLLHD 420 MMNSLSSGTG FEGAAFELEP FGSIPNMLNN NAKKDSNNLT HFNVSGSDEG GANGGGNGEG 480 LTRDFLGLRS LSHSDILNIA GLGNCVNTAN APATTASRDY QKPWQG*

Sequence ? help Back to Top

Protein Sequence Length: 527 aa Download sequence Send to blast

MMLFHQQQSQ RLVDENISNL TSASGEAASA LSGNKNEIGT RFSQQFFTTP PQAQPTLKKK  60
RNLPGNPDPD AEVIALSPKT LMATNRFICE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRTS  120
KEVRKKVYVC PEASCVHHDP SRALGDLTGI KKHFCRKHGE KKWKCDKCSK RYAVQSDWKA  180
HSKTCGTREY RCDCGTLFSR RDSFITHRAF CDALAEESAR AITSANHPHH LLISQQQPQM  240
NLNQVQLGHQ FNQDIHGFSL KKEQQSFTTL RPDLPPWLGP PNCTIDLSSS SSLFSPTHHQ  300
DLSLHDSHND TSQNPNPSSL PPFQPAPSPH ISATALLQKA AQMGATMSSK NSTTAATTSE  360
AAATSASPQP MVRAHQHNPG HVSDFAAAGA NAIPGTTGPA VSSVHHHHQN QHQQASLLHD  420
MMNSLSSGTG FEGAAFELEP FGSIPNMLNN NAKKDSNNLT HFNVSGSDEG GANGGGNGEG  480
LTRDFLGLRS LSHSDILNIA GLGNCVNTAN APATTASRDY QKPWQG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	2e-35	159	227	3	71	Zinc finger protein JACKDAW
5b3h_F	2e-35	159	227	3	71	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	113	125	KLKQRTSKEVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr028264.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM465183	1e-124	AM465183.2 Vitis vinifera contig VV78X062580.11, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009337719.1	0.0	PREDICTED: protein indeterminate-domain 7-like
Refseq	XP_018498739.1	0.0	PREDICTED: protein indeterminate-domain 7-like
Swissprot	Q9LRW7	1e-128	IDD11_ARATH; Protein indeterminate-domain 11
TrEMBL	A0A498H7L6	0.0	A0A498H7L6_MALDO; Uncharacterized protein
STRING	XP_009337719.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-114	indeterminate(ID)-domain 7

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]