PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr028324.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 433aa MW: 48530.4 Da PI: 8.7889

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr028324.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	5e-05	61	83	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k + +s++k H++t+ Pbr028324.1 61 WVCDKCSKGYAVQSDYKAHLKTC 83 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	6.6E-4	52	82	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MHRRRHKVPW KLLKRESPVV KKRVFVCPEP SCLHHDPCHA LGDLVGIKKH FRRKHSNHKQ 60 WVCDKCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDACN MDRVRPESQT 120 LQPGACLSRT ASSPSPSCSD NNFSRAPSTW PPSNNLVLPH PSPTEYTKLI LNNPPAHADH 180 HQATLSKKNS GNAHYNLDLQ LATTSNINIP INEVSVSSKR EENHSTQLQL SIGSCEFGGG 240 GHSHQNKNIE QHSNIMIANQ NYSPRENEMK EREMESSSTT TNHHERDDDD QKPKLAATAA 300 GVLRLKEEAR EQLRLAMAER AYANEARQQA ERHIELAEKE FANAKRIRQQ AEAELDKAHA 360 LKEQAVKKVN STILQITCHA CNKQFIQGAH EAKTNQHCLV LSYMSSAIAS EGDHLLEKNI 420 STRTHHAKSA NA*

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MHRRRHKVPW KLLKRESPVV KKRVFVCPEP SCLHHDPCHA LGDLVGIKKH FRRKHSNHKQ  60
WVCDKCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDACN MDRVRPESQT  120
LQPGACLSRT ASSPSPSCSD NNFSRAPSTW PPSNNLVLPH PSPTEYTKLI LNNPPAHADH  180
HQATLSKKNS GNAHYNLDLQ LATTSNINIP INEVSVSSKR EENHSTQLQL SIGSCEFGGG  240
GHSHQNKNIE QHSNIMIANQ NYSPRENEMK EREMESSSTT TNHHERDDDD QKPKLAATAA  300
GVLRLKEEAR EQLRLAMAER AYANEARQQA ERHIELAEKE FANAKRIRQQ AEAELDKAHA  360
LKEQAVKKVN STILQITCHA CNKQFIQGAH EAKTNQHCLV LSYMSSAIAS EGDHLLEKNI  420
STRTHHAKSA NA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-17	57	110	3	56	Zinc finger protein JACKDAW
5b3h_F	1e-17	57	110	3	56	Zinc finger protein JACKDAW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr028324.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009355978.1	0.0	PREDICTED: protein SHOOT GRAVITROPISM 5-like
TrEMBL	D9ZIU8	0.0	D9ZIU8_MALDO; C3HL domain class transcription factor
STRING	XP_009355978.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1769	32	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01940.2	5e-78	C2H2-like zinc finger protein