PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr028383.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WOX
Protein Properties Length: 383aa    MW: 43415.4 Da    PI: 7.8889
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr028383.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.44.4e-2289148357
                  --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                  +R+++t+eql++Leel+++ +r+psae++++++++l    +++ ++V++WFqN++a+e++
  Pbr028383.1  89 SRWNPTPEQLRALEELYRRgTRTPSAEQIQHITAQLrkygKIEGKNVFYWFQNHKARERQ 148
                  7*****************99**************************************97 PP
2Wus_type_Homeobox115.52.5e-3788150365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
        Pbr028383.1  88 SSRWNPTPEQLRALEELYRRGTRTPSAEQIQHITAQLRKYGKIEGKNVFYWFQNHKARERQKR 150
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.6E-586153IPR001356Homeobox domain
SuperFamilySSF466892.31E-1289154IPR009057Homeodomain-like
PfamPF000469.0E-2089148IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.3E-989148IPR009057Homeodomain-like
CDDcd000862.75E-690150No hitNo description
PROSITE profilePS5007111.22494149IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MWMMGYNDGG HGDFNMPDSF NGRKLRTLIP RQLPSVNNTS STITTPPCLN RSAIHGSHDF  60
LTQYHQLAAM AEQNKRSEFL NTPQVVVSSR WNPTPEQLRA LEELYRRGTR TPSAEQIQHI  120
TAQLRKYGKI EGKNVFYWFQ NHKARERQKR RRQMESSALS AEHDQQLQIS MTSTDNQKKE  180
ELLGANRTGF EVAETKNWAP STNCNTAATL VEESVSIQRA AKTAAAECRT DGWIQFDEEE  240
LQQRRNFVER NATWQMMQLS CPSHPHPHPP THLINTPPTC ASTTARSRAA ATVRRDQRLF  300
KSHDLSIFIA PYTSETGFNT VTEQDPGCEE SQTLQLFPLR SGHVNACANA NELSVNDKDH  360
TELSATFSAH PFPFFEFLPL KN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr028383.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009356043.10.0PREDICTED: WUSCHEL-related homeobox 1
TrEMBLA0A498JSV30.0A0A498JSV3_MALDO; Uncharacterized protein
STRINGXP_009356043.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28923471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.13e-61WUSCHEL related homeobox 1