PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr028604.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 595aa    MW: 65940.2 Da    PI: 6.6765
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr028604.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.18.6e-29119175359
                  -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES-.-SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYege.Hnhe 59 
                   gynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers  d++++ei+Y+g  Hnh 
  Pbr028604.1 119 HGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSY-DGQITEIIYKGApHNHV 175
                  69**************************************.**********9669995 PP
2WRKY105.33.3e-33331389159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k+v++tYeg+Hnhe
  Pbr028604.1 331 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCSVRKHVERASHDLKFVITTYEGKHNHE 389
                  59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-24111175IPR003657WRKY domain
PROSITE profilePS5081121.425112174IPR003657WRKY domain
SuperFamilySSF1182901.96E-21116174IPR003657WRKY domain
SMARTSM007741.2E-28117176IPR003657WRKY domain
PfamPF031066.3E-21120174IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.2E-36317391IPR003657WRKY domain
SuperFamilySSF1182901.83E-28324391IPR003657WRKY domain
PROSITE profilePS5081138.09326391IPR003657WRKY domain
SMARTSM007741.1E-37331390IPR003657WRKY domain
PfamPF031061.7E-25332389IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MSKGGVTLIS FPKGSTVDYQ ALVLEQQPME FQFPMEFSKE ANAMNYAVDP STDVRNISSG  60
VIMNANGTNL QMSHSSAASD QNSLPKEVVD GEDMGTHQFS EGEHKGSYSA AGMVRTSEHG  120
YNWRKYGQKQ VKGSEYPRSY YKCTHPNCQV KKKVERSYDG QITEIIYKGA PHNHVKLQPN  180
RKAGASVGPS FSYDKMLEMG EGSRAAVKVE GGPVWTNIQS CKDRKVGYDG RPDGLERTSS  240
ASVVTELSDP FSTTQGKSMN IFESAETPEL SSTLASHDDD DQATQGSISL GDDADDEESD  300
SKRRQVNFCL SQRDVHKPRV VVQIESEIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTSA  360
GCSVRKHVER ASHDLKFVIT TYEGKHNHEV PAARNSNHMN SSSGNGLPST ANAQPVLALP  420
RNTNIPKPET QLQDLAPHFD RQAEFHDKYM RPSFLGNFSN DMKFGASSPY QMKYPPLQNT  480
MLYASFGMHA NHNVTHQAGS VVPDFPISLP MNLPPSGNLP LASYDFNNGK SVCPEQPYFS  540
GQQLQEIDVR FLQPKQEQKD DNLYDACFPT MDQSSAALPS SSLFYHRFMG GYPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-34106392178Probable WRKY transcription factor 4
2lex_A1e-34106392178Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr028604.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009338014.10.0PREDICTED: probable WRKY transcription factor 2
TrEMBLA0A498K9W80.0A0A498K9W8_MALDO; Uncharacterized protein
STRINGXP_009338014.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83493445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.16e-84WRKY DNA-binding protein 2