PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr028813.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 238aa    MW: 26623.7 Da    PI: 5.9799
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr028813.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.74.2e-08124171455
                  HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +h+ +Er RR++iN+++  L+ l+P +     k +  a +L  ++ Y++sLq
  Pbr028813.1 124 SHSLAERLRREKINERLRCLQNLVPGC----YKTMGMAVMLDVVCSYVQSLQ 171
                  8*************************8....355888999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.90E-10118175No hitNo description
SuperFamilySSF474593.01E-16118189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-15120182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.888120170IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-5124171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-7126176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:2000488Biological Processpositive regulation of brassinosteroid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MELIDNLCDL ETSLGTNIHH EIMALSGNDT SLTTDDYHQP QPDDHQLPIN FTQHIQSFSQ  60
ISDDPNHDDV LGARSTAHLM NGDFRQETGK GKARGRKRKN SEKDGEKLKE VIHVRAKRGQ  120
ATDSHSLAER LRREKINERL RCLQNLVPGC YKTMGMAVML DVVCSYVQSL QNQIEFLSMK  180
LSAASAYYDF NTPGVDAVDA MQQQQGTSTA YPEVQEMVVR SEGYGGLPHY NNATWPI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr028813.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009356252.11e-177PREDICTED: transcription factor bHLH75-like
SwissprotA4D9988e-48BH075_ARATH; Transcription factor bHLH75
TrEMBLA0A498HKX91e-134A0A498HKX9_MALDO; Uncharacterized protein
STRINGXP_009356252.11e-177(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF148131112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.12e-50bHLH family protein
Publications ? help Back to Top
  1. Khan M, et al.
    Interplay between phosphorylation and SUMOylation events determines CESTA protein fate in brassinosteroid signalling.
    Nat Commun, 2014. 5: p. 4687
    [PMID:25134617]
  2. Eremina M, et al.
    Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(40): p. E5982-E5991
    [PMID:27655893]
  3. Pfannebecker KC,Lange M,Rupp O,Becker A
    Seed Plant-Specific Gene Lineages Involved in Carpel Development.
    Mol. Biol. Evol., 2017. 34(4): p. 925-942
    [PMID:28087776]