PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr028848.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 724aa    MW: 79077.7 Da    PI: 10.6835
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr028848.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.42.2e-103284247
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqky 47
                      +W t+E++ll++avk++G ++W+t+a +++       +  t+ +c ++++++
      Pbr028848.1 32 SSWGTWEELLLACAVKRHGAHDWDTVAMELQaktslppLLTTASNCNLKYLDL 84
                     57*****************************8888888667888888887766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.00813087IPR001005SANT/Myb domain
PfamPF002491.1E-83284IPR001005SANT/Myb domain
CDDcd001671.24E-43466No hitNo description
Gene3DG3DSA:1.20.920.106.8E-16309442IPR001487Bromodomain
SMARTSM002972.8E-16318427IPR001487Bromodomain
CDDcd043691.28E-14325422No hitNo description
SuperFamilySSF473701.06E-17327424IPR001487Bromodomain
PfamPF004395.7E-10332406IPR001487Bromodomain
PROSITE profilePS5001412.043337408IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MKGGAAAAAN TPSFNNNNNI TTTSDQTTTS TSSWGTWEEL LLACAVKRHG AHDWDTVAME  60
LQAKTSLPPL LTTASNCNLK YLDLRRRFHS RQQNDDVPPD ADDVHHDPHN NNTTNIPWLD  120
DLRKLRVAQL RQELHGYDVS IVSLQLKVKR LEEEREDSFK DDDPKPDLEE EQQQDSNRHR  180
SENDKTVRGK PDGSKPDHEN QSVNGSNSTC SKNLDHDNKP GRGDRALSEP GPLSAGSDEP  240
SKKTGSGQSD SDSDKGSSET VAKKRRVRGR QGKGGGDSAG ELRESSEAQS SVSLTKKRNG  300
KRHRRMEVPE QQQQQHNNED VSLVKSEPLI EVLQLIRAHE HGSLFERRLS AQESDKYKSI  360
VQQHVDLETI QSKLRKDSYS SCSLSFYRDL LLLFNNAVVF FPKSSLHSNT AHQLRRLVLN  420
EMKKKNLITR PNHDPAPEPS DSAVPAPATS QQPKRPDQLE RSDSLLAKQK STAPIIVCRK  480
RSSISSKPSA AAPSFGQTLK GDDNKKAAAF DLKSSIKNSK ASSDNHAAAQ NHGGSVVLKS  540
AAAAKAKDNP VITGTRGSRR SSTSIAHHEN NTSASKKKQS VSPASLKAET PKANKNGKME  600
AAGSDKKRSA AADFLKRIKR NSPADTLKRG GTGTGTSSRS GGEQKRRGGI GKADKVKERV  660
LRQSGNKKKQ AKEESSSPSR RSVGRPPKKA AAEAANAVAS PKRARVSGGK QEASRRPKKR  720
SRR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1714720RRPKKRS
2714722RRPKKRSRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr028848.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6532250.0AY653225.1 Malus x domestica TFCR (TFCR) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009356285.10.0PREDICTED: uncharacterized protein LOC103947152
TrEMBLA0A498JE580.0A0A498JE58_MALDO; Uncharacterized protein
STRINGXP_009356285.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.11e-65DNA-binding bromodomain-containing protein