PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr029012.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 382aa    MW: 42742.2 Da    PI: 9.743
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr029012.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.71e-051234123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C+k F r  nL+ H r H
  Pbr029012.1 12 FVCEICNKGFQRDQNLQLHRRGH 34
                 89*******************88 PP
2zf-C2H212.40.0004889111123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC++C+k +  +s+ k H +++
  Pbr029012.1  89 WKCEKCSKKYAVQSDWKAHSKVC 111
                  58*****************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.2E-51134IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.26E-71134No hitNo description
SMARTSM003550.0171234IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9491234IPR007087Zinc finger, C2H2
PfamPF121715.7E-51234IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002801434IPR007087Zinc finger, C2H2
SMARTSM00355995484IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.5E-477109IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.26E-784109No hitNo description
SMARTSM0035514089109IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MSPKSLMATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL KQRSKTEVIR KKVYVCPEKT  60
CVHHEPSRAL GDLTGIKKHF SRKHGEKKWK CEKCSKKYAV QSDWKAHSKV CGTREYRCDC  120
GTLFSRKDSF ITHRAFCDAL AAEQSARFCS DSTIHPSFMN GSFTNNAHQP QRIPNFIPMF  180
QSEFAGSDHL AANNSHLSSK AFMPEMLQTA SMDMFGSSSS SSQMQWLINN KKFVEESSFA  240
NANNLSMSSA LLLRGVLKEE EQSKGSFSET ITTTTTSFYN NNINNNQNHH QQKPMSATAL  300
LQKEARMAST TSNKNPVTAF NDAAFNFNDL VNFMSPSSTQ GATVGDGSLF LSNKHSMMSA  360
EAAAMTKQGQ SEQSSLTRDF L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-3485148365Zinc finger protein JACKDAW
5b3h_F3e-3485148365Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14051KQRSKTEVIRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr029012.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009338257.10.0PREDICTED: protein indeterminate-domain 9-like isoform X1
RefseqXP_018498859.10.0PREDICTED: protein indeterminate-domain 9-like isoform X2
TrEMBLA0A498KB260.0A0A498KB26_MALDO; Uncharacterized protein
STRINGXP_009338257.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.18e-87C2H2-like zinc finger protein