PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr029016.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NF-YC
Protein Properties Length: 223aa    MW: 24939.8 Da    PI: 10.7579
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr029016.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC42.71.3e-131152041099
        NF-YC  10 iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                  + +++++k  ++P+ r+++i+++++   +is +a  l+ ka e f+ ++   s   + + +r+++    +a++v++ + +dfl d vp++
  Pbr029016.1 115 VADEEEVKAYTFPMERVRRIIRSEDPDLRISNDAVFLINKATEKFLEKFCEESHACCVKDRRKAIAYKHLATVVSKRKRYDFLSDYVPEK 204
                  5567899***************9777778**********************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471131.01E-18111203IPR009072Histone-fold
PfamPF008085.0E-17125188IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.105.3E-22126203IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MATPKKDIPP KKTKEVKKPS TKSPLPKKTQ QTKKPTTAKA KTPEKKKPSS AKKSTNINKI  60
TSNGNARESD VEAVPSPRSE SRRGAEQNGG KITKTPTTKS KKGKEKGKRK REGEVADEEE  120
VKAYTFPMER VRRIIRSEDP DLRISNDAVF LINKATEKFL EKFCEESHAC CVKDRRKAIA  180
YKHLATVVSK RKRYDFLSDY VPEKVKAEDA LAKRKLAEAK AG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174192RRKAIAYKHLATVVSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr029016.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009338262.11e-157PREDICTED: uncharacterized protein LOC103930629
TrEMBLA0A498KGE01e-138A0A498KGE0_MALDO; Uncharacterized protein
STRINGXP_009338262.11e-156(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120163031
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.11e-28nuclear factor Y, subunit C10