PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr029333.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 81aa    MW: 8941.99 Da    PI: 4.4979
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr029333.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF41.31.9e-1338682151
                 HHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF 21 lKKAeELSvLCdaevaviifsstgklyeyss 51
                 +KKA ELS++C+ e+aviifs+tgkl+++ss
  Pbr029333.1 38 FKKAGELSIMCESEAAVIIFSQTGKLFDFSS 68
                 9****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.00243269IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-83247IPR002100Transcription factor, MADS-box
PfamPF003193.2E-103866IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-103873IPR002100Transcription factor, MADS-box
PROSITE profilePS5006612.9793870IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-84768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 81 aa     Download sequence    Send to blast
MHGLGRIGEN DEGEDQDQED RLLAGKAGDL LKDEKRDFKK AGELSIMCES EAAVIIFSQT  60
GKLFDFSSSR YQPCTRIFPT *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr029333.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1649971e-69KP164997.1 Malus domestica dormancy-associated MADS-box transcription factor (DAM2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A498JGW81e-25A0A498JGW8_MALDO; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.13e-11AGAMOUS-like 24