PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr029392.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 472aa    MW: 52547.6 Da    PI: 6.2028
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr029392.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS466.21.8e-142464681374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lLl+cA++v++g+le+a+a+L+++s+las dgd+mqR+aayfteALa r+++ +++l  al++++ s   +see+ ++k+f+e+ P+lk++ +++
  Pbr029392.1  46 LIHLLLTCANHVAAGSLENANAALEQISQLASADGDTMQRIAAYFTEALADRILKAWPGLHTALNSTKIS--LVSEEILVRKVFFEMLPFLKVAVVLT 141
                  689*************************************************************999997..7************************* PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  NqaI+ea+ege++vHiiD+++ +++QW+aLlq L++Rpegpp+lRiTgv++    +k+ l ++++rL+++Ae+l++pf+f + ++++le+l++++Lrv
  Pbr029392.1 142 NQAIMEAMEGEKMVHIIDLSAAEPAQWIALLQVLSARPEGPPHLRITGVHQ----QKDVLDQMAHRLTEVAEKLDIPFQFCP-IVSKLENLDMDKLRV 234
                  ***************************************************....9**************************.7999*********** PP

         GRAS 197 kpgEalaVnlvlqlhrll......................................................desvsles..erdevLklvkslsPkv 238
                  k+gEala+++vlqlh+ll                                                      ++++sl+   + d++L+++++l Pkv
  Pbr029392.1 235 KTGEALAISSVLQLHSLLasddellkrksplaskgsngnrlpralqmsqgtlgellekemgnryspspdstsSSPLSLTPsaKLDSFLNAFWDLTPKV 332
                  ********************************************************************999855555544457899************ PP

         GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336
                  +v++eq+++hn+++++er+leal+ y+alfd+le+++pr+s er kvE++l+g+ei+n+vaceg+er+erhe+lekW +rl+ aGF++vpls++ + q
  Pbr029392.1 333 MVITEQDSNHNGSTLMERLLEALYSYAALFDCLESTMPRTSLERLKVEKMLFGEEIKNIVACEGSERIERHEKLEKWIRRLDLAGFGNVPLSYYGMLQ 430
                  ************************************************************************************************** PP

         GRAS 337 aklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  ak++l+ ++ +gyr+ ee+g+++  W+drpL+svSaWr
  Pbr029392.1 431 AKRMLQGYGCNGYRMREENGCVLVSWQDRPLFSVSAWR 468
                  *************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098559.27320448IPR005202Transcription factor GRAS
PfamPF035146.3E-14046468IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MFQDEGSSSA PSSPLQFFST MSLSPSLGSP YPWLKELKSE ERGLYLIHLL LTCANHVAAG  60
SLENANAALE QISQLASADG DTMQRIAAYF TEALADRILK AWPGLHTALN STKISLVSEE  120
ILVRKVFFEM LPFLKVAVVL TNQAIMEAME GEKMVHIIDL SAAEPAQWIA LLQVLSARPE  180
GPPHLRITGV HQQKDVLDQM AHRLTEVAEK LDIPFQFCPI VSKLENLDMD KLRVKTGEAL  240
AISSVLQLHS LLASDDELLK RKSPLASKGS NGNRLPRALQ MSQGTLGELL EKEMGNRYSP  300
SPDSTSSSPL SLTPSAKLDS FLNAFWDLTP KVMVITEQDS NHNGSTLMER LLEALYSYAA  360
LFDCLESTMP RTSLERLKVE KMLFGEEIKN IVACEGSERI ERHEKLEKWI RRLDLAGFGN  420
VPLSYYGMLQ AKRMLQGYGC NGYRMREENG CVLVSWQDRP LFSVSAWRCR K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-45464684375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr029392.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009338539.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLM5WFN20.0M5WFN2_PRUPE; Uncharacterized protein
STRINGXP_009338539.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]