PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr029435.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

WRKY

Protein Properties

Length: 222aa MW: 24848.3 Da PI: 9.7347

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr029435.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	103.3	1.3e-32	142	200	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+ Pbr029435.1 142 LDDGYRWRKYGQKAVKNSSYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 200 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.5E-33	128	200	IPR003657	WRKY domain
SuperFamily	SSF118290	2.22E-28	134	201	IPR003657	WRKY domain
PROSITE profile	PS50811	28.862	137	202	IPR003657	WRKY domain
SMART	SM00774	5.3E-38	142	201	IPR003657	WRKY domain
Pfam	PF03106	7.6E-26	143	200	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MEDHHQQHNP PPLTSQLPPL SLPFLLPPPP QNPPLPPPYL FTPSSSSSLM TNPPDLLDID 60 WVSLLSGGTQ AAGWLSHDQI NSFKPMAMVD KNISGSAGTI ISEAADQEEK VGIKRKAGGR 120 MRKAAASRPR FAFHTRSTDD ILDDGYRWRK YGQKAVKNSS YPRSYYRCTH HTCNVKKQVQ 180 RLSKDTSIVV TTYEGIHNHP CEKLMETLTP LLKQMQFLSR F*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	7e-25	130	199	2	71	WRKY transcription factor 1
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00539	DAP	Transfer from AT5G41570	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr029435.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009338781.1	1e-166	PREDICTED: probable WRKY transcription factor 24
Refseq	XP_009350324.1	1e-166	PREDICTED: probable WRKY transcription factor 24
TrEMBL	A0A498JCT0	1e-133	A0A498JCT0_MALDO; Uncharacterized protein
STRING	XP_009338781.1	1e-165	(Pyrus x bretschneideri)
STRING	XP_009350324.1	1e-165	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3227	34	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64000.1	3e-57	WRKY DNA-binding protein 56