PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr029461.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 1314aa    MW: 151103 Da    PI: 7.8416
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr029461.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.63.4e-06237256625
                  -SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                  C+f+++tG C++G rC++ H
  Pbr029461.1 237 CPFHLKTGACRFGQRCSRVH 256
                  ******************99 PP
2zf-CCCH25.22.9e-08357384126
                  --S---SGGGGTS..--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartG..tCkyGdrCkFaHg 26 
                  +k ++C  ++++   tC++G  C+F+H+
  Pbr029461.1 357 WKVAICGEYMKSRykTCSRGTACNFIHC 384
                  899************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.732231259IPR000571Zinc finger, CCCH-type
SMARTSM0035631232258IPR000571Zinc finger, CCCH-type
PRINTSPR018487.9E-27237256IPR009145U2 auxiliary factor small subunit
PRINTSPR018487.9E-27256276IPR009145U2 auxiliary factor small subunit
PROSITE profilePS5010210.104263355IPR000504RNA recognition motif domain
Gene3DG3DSA:3.30.70.3307.1E-23263355IPR012677Nucleotide-binding alpha-beta plait domain
CDDcd125403.92E-46264355No hitNo description
PRINTSPR018487.9E-27292307IPR009145U2 auxiliary factor small subunit
SuperFamilySSF549288.69E-13295355IPR012677Nucleotide-binding alpha-beta plait domain
PRINTSPR018487.9E-27320342IPR009145U2 auxiliary factor small subunit
SMARTSM003560.15356385IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.624356386IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-5357384IPR000571Zinc finger, CCCH-type
PRINTSPR018487.9E-27376388IPR009145U2 auxiliary factor small subunit
PfamPF132344.7E-289581110IPR025696rRNA-processing arch domain
SMARTSM011421.8E-8411361313IPR012961ATP-dependent RNA helicase Ski2, C-terminal
PfamPF081487.0E-4911391308IPR012961ATP-dependent RNA helicase Ski2, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000398Biological ProcessmRNA splicing, via spliceosome
GO:0089701Cellular ComponentU2AF
GO:0000166Molecular Functionnucleotide binding
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1314 aa     Download sequence    Send to blast
MESALAEAAA KEGEGVGGGI VPRTEPLGAE KGMTNRKEKR KAMKKMKRKQ TRKEMALKER  60
EEHDAILNDP LELAKITMIE QEEAERSERE RKIFEEREKV WMEAMEVKRK KQIEEEEEEE  120
RRRIKALEEE DELRNEQVEN ANDGNEVDEW DYEEGPAEII WQGNEIILKK KRVKIPKKNT  180
DQESRKKDSD RPTSNPLPPQ SEAFSDHKSS SMSAQQLIES VAQQVPHFGT EQDKAHCPFH  240
LKTGACRFGQ RCSRVHFCPD KSSTLLIKNM YNGPGLAWEQ DEGLEYTDEE VERCFEEFYE  300
DVHTEFLKFG EIINFKVCRN GAFHLRGNVY IHYKSLDSAV VAYQSVNGRY FAGKQGWKVA  360
ICGEYMKSRY KTCSRGTACN FIHCFRNPGG DYEWADSDRP PPKFWARKMV ALFGYSDADD  420
KPMVEENFGQ WRNTSKMSLG DSERYGLRRS RSRGRDSDSG RRYDNENNVL EGTCRQKCKG  480
DEDLCEENKN LRNYNPRRSR KWDTESDGEL LEREIDRDRH RGHTRHSSRQ QNRDHMNKTY  540
ETESDGDLSQ RNRIAQHVTR KSSSQQRKVE SPDEYRDREN KNHEVNWDWS HRDRDKDAVY  600
HDNGRHSGQK RKVRCRGDHK DIKNRAHDTD GERSDSNMKG DEHHSGRKSM GRSSYSSKAS  660
KFSNHGGRTT RSYSTDLSDD LLENNAERPP CHARKRSKRL DEVSDISDED KVPTLDMKHR  720
RDHLSIEMRE ADSLVENLKS RGTHESSSVG PDDIRFNSDV LTDKEDRWEP ENSSVENGIY  780
HTSKRKAGSS ESCDSGRPGP SKGRDESSDF DSELYYYGKI GREKDEKSDR VTHSEHGKSR  840
RKSRNKDRKL DSDNRPRQGS SQSSHRRHSS GLDDATDSSV GDRESVRKHK RHHAGGQLVA  900
SYGYPPLPPL PSHKSGFHTS SGFRTRDLQF LVLKKFRNPF FTTLLLNNSF CCPDDASRKP  960
EDANYTVDVL TRCGVSPSEV AKKTIKIIPL KEPGEPAVFS ISISQINSMS ELCMVVPKDL  1020
LPLPAQENTL KRVVETLSRF DKGKIPLLDP EEDMKIESSS YKKVSRRMEA LENLFDRHEV  1080
ARTPLIEQKL KVFHMKQDLA AKIKSIKKTM CSSTALAFKD DLKARKQVLR RLAYVTKDDV  1140
VELKGKVACE ISSAEELTLT ELMFNGAFKD IKVEEMVSLL SCFVWQEKRK EAIKPREKLD  1200
LLFSQLQDTA RRVADVQLEC KVKIDVDSFV GSFRPDIMEA VYAWAEGSKF YEIMSATPVF  1260
EGSLIRAIRR LEEVLQQLIQ AAKSVGETEL ESKFEEAVSK IKRDIVFAAS LYL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6d6q_M1e-8296213136941045Exosome RNA helicase MTR4
6d6r_M1e-8296213136941045Exosome RNA helicase MTR4
6ieh_B1e-829621313628979Exosome RNA helicase MTR4
6ro1_A1e-829621313622973Exosome RNA helicase MTR4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1107122KRKKQIEEEEEEERRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr029461.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028950772.10.0zinc finger CCCH domain-containing protein 5
TrEMBLA0A498HRR40.0A0A498HRR4_MALDO; Uncharacterized protein
STRINGXP_009338690.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47132433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10320.11e-136C3H family protein