PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr029523.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family Dof
Protein Properties Length: 367aa    MW: 38917.9 Da    PI: 9.0462
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr029523.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.82.7e-3986146262
       zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                  +e+alkcprC+stntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+
  Pbr029523.1  86 PEQALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 146
                  5799******************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-3474144IPR003851Zinc finger, Dof-type
PfamPF027011.3E-3288144IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.54490144IPR003851Zinc finger, Dof-type
PROSITE patternPS01361092128IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MVFSSIPAYL DPANWQQQPN QHHHLTGSNT NNISNNNIDN NNSHFLPPPP QPPPSNPHGG  60
SGVGGSGSIR PGSMADRARM ANIPLPEQAL KCPRCESTNT KFCYFNNYSL TQPRHFCKTC  120
RRYWTRGGAL RNVPVGGGCR RNKRSKGTSS SASKSPASSS DPPTGSASSS GHANLGLNNN  180
STAGSADNDN MMMSPQIPPL RFMSPFATDM ALNFGMMNNN YGIGDLNGFH QMGSGPGASG  240
GSLFNFQQQT PSFPFMAGLD PTSAGLMFES SGVELTGYNQ VRPRAPSAGM SIPQMASVKT  300
ELESQQQQQE LNLSRQLLGM NNNSGNDQFW SNGGRGGGGA STTTAWTDLS GFNSTSTTSN  360
NINNPL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332338GGRGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr029523.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009338756.10.0PREDICTED: dof zinc finger protein DOF2.4-like
TrEMBLA0A498K4N30.0A0A498K4N3_MALDO; Uncharacterized protein
STRINGXP_009338756.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.18e-49DNA binding with one finger 2.4