PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr029524.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family E2F/DP
Protein Properties Length: 287aa    MW: 31610.5 Da    PI: 6.6323
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr029524.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP51.22e-1658135471
      E2F_TDP   4 ksLrlltqkflklleksee.givtlnevakeLvse.............dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                   +Lr ++++   +++  e+ g++tl++va+e++se             +++n rRR+Y ++ VLeal++++  +k+ei+wkg
  Pbr029524.1  58 GGLREFSSR---VCNILESkGTTTLSKVADEIISEfsgndcetakcskEFENVRRRVYTVFHVLEALDIVTT-AKKEIKWKG 135
                  59*******...99998888****************************99999******************9.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013721.6E-1455135IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.8E-2456139IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.35E-1259136IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023191.2E-1359135IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144588.13E-27141244IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.83E-31145257No hitNo description
PfamPF087812.8E-27146251IPR014889Transcription factor DP, C-terminal
SMARTSM011381.9E-30150275IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MDDNYSGDSS SGFSQKDSSA ASSVSASVMN NAAASEGAQS SVEINAPKKK RASAIMAGGL  60
REFSSRVCNI LESKGTTTLS KVADEIISEF SGNDCETAKC SKEFENVRRR VYTVFHVLEA  120
LDIVTTAKKE IKWKGRPPDR SIMNLEGMNE ECVKLVNTIG RKTAYLKELE EQIADLKDLM  180
LHNKQLLKNG NTLPEGFSLP FILVQTSSHA SVEVEISEDM RMVYFDFNST PFSLHDDATI  240
VKLLHRHQRP ERTNAPQSAS VHSSPRSGAL TRPFRWNSET DIPNST*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-18591391192PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr029524.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009338757.10.0PREDICTED: transcription factor-like protein DPB
TrEMBLA0A498K4A91e-168A0A498K4A9_MALDO; Uncharacterized protein
STRINGXP_009338757.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33213366
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.13e-59Transcription factor DP