PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr029686.2
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 28085.7 Da    PI: 10.0062
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr029686.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.62.6e-312473150
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  Pbr029686.2 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 73
                 79***********************************************8 PP
2K-box110.51.7e-36921884100
        K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  ++g s++ea+++ +qqe++kL+++i+++q+++Rh+lGe+L++L++keL++Le +Lek++++iRskKne+l+++ie +qk+e elq++n+ Lr+k++e
  Pbr029686.2  92 TDGGSVSEANTQFYQQEASKLRRQIREIQNSNRHILGESLSTLKVKELKNLEVRLEKGISRIRSKKNEILFSEIEFMQKRETELQHHNNFLRAKIAE 188
                  566779****************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-401675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.5011676IPR002100Transcription factor, MADS-box
CDDcd002659.49E-441791No hitNo description
SuperFamilySSF554551.44E-321788IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-331838IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PfamPF003191.9E-262572IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-333853IPR002100Transcription factor, MADS-box
PRINTSPR004048.0E-335374IPR002100Transcription factor, MADS-box
PfamPF014862.4E-26100186IPR002487Transcription factor, K-box
PROSITE profilePS5129714.556102192IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MEFPNQAPES STQKKLGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
IVFSTRGRLY EYANNSIRAT IDRYKKACAD STDGGSVSEA NTQFYQQEAS KLRRQIREIQ  120
NSNRHILGES LSTLKVKELK NLEVRLEKGI SRIRSKKNEI LFSEIEFMQK RETELQHHNN  180
FLRAKIAESE REQQQQHTHM MPGTSYDPSM PSNSYDRNFF PVILESNNNH YPRQGQTALQ  240
LV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P5e-201684169Myocyte-specific enhancer factor 2B
1tqe_Q5e-201684169Myocyte-specific enhancer factor 2B
1tqe_R5e-201684169Myocyte-specific enhancer factor 2B
1tqe_S5e-201684169Myocyte-specific enhancer factor 2B
5f28_A6e-201684169MEF2C
5f28_B6e-201684169MEF2C
5f28_C6e-201684169MEF2C
5f28_D6e-201684169MEF2C
6byy_A7e-201684169MEF2 CHIMERA
6byy_B7e-201684169MEF2 CHIMERA
6byy_C7e-201684169MEF2 CHIMERA
6byy_D7e-201684169MEF2 CHIMERA
6bz1_A7e-201684169MEF2 CHIMERA
6bz1_B7e-201684169MEF2 CHIMERA
6c9l_A5e-201684169Myocyte-specific enhancer factor 2B
6c9l_B5e-201684169Myocyte-specific enhancer factor 2B
6c9l_C5e-201684169Myocyte-specific enhancer factor 2B
6c9l_D5e-201684169Myocyte-specific enhancer factor 2B
6c9l_E5e-201684169Myocyte-specific enhancer factor 2B
6c9l_F5e-201684169Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00093SELEXTransfer from AT3G58780Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr029686.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2511170.0AJ251117.1 Malus domestica mRNA for C-type MADS box protein (mads14 gene).
GenBankKP1640080.0KP164008.1 Pyrus pyrifolia clone PpAG-1 AG MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009356654.10.0PREDICTED: floral homeotic protein AGAMOUS-like isoform X1
RefseqXP_009356655.10.0PREDICTED: floral homeotic protein AGAMOUS-like isoform X1
RefseqXP_009356657.10.0PREDICTED: floral homeotic protein AGAMOUS-like isoform X1
RefseqXP_018503021.10.0PREDICTED: floral homeotic protein AGAMOUS-like isoform X1
RefseqXP_018503022.10.0PREDICTED: floral homeotic protein AGAMOUS-like isoform X1
RefseqXP_018503023.10.0PREDICTED: floral homeotic protein AGAMOUS-like isoform X2
SwissprotQ93XH41e-122MADS1_VITVI; Agamous-like MADS-box protein MADS1
TrEMBLA0A0D4ZYU31e-177A0A0D4ZYU3_PYRPY; AG MADS-box protein
STRINGXP_009356654.11e-180(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-116MIKC_MADS family protein
Publications ? help Back to Top
  1. Boss PK,Vivier M,Matsumoto S,Dry IB,Thomas MR
    A cDNA from grapevine (Vitis vinifera L.), which shows homology to AGAMOUS and SHATTERPROOF, is not only expressed in flowers but also throughout berry development.
    Plant Mol. Biol., 2001. 45(5): p. 541-53
    [PMID:11414613]
  2. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  3. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]