PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr029706.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

C2H2

Protein Properties

Length: 490aa MW: 51488.6 Da PI: 7.9942

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr029706.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2e-05	32	54	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Pbr029706.1 32 FVCEICSKGFQRDQNLQLHRRGH 54 89*******************88 PP
2	zf-C2H2	11.3	0.0011	108	130	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + Pbr029706.1 108 WKCDKCSKKYAVQSDWKAHSKIC 130 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.2E-6	31	54	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.8E-5	31	54	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.887	32	54	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.036	32	54	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	34	54	IPR007087	Zinc finger, C2H2
SMART	SM00355	260	73	103	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	7.2E-4	96	129	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.2E-6	103	128	No hit	No description
SMART	SM00355	150	108	128	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009937	Biological Process	regulation of gibberellic acid mediated signaling pathway
GO:0010029	Biological Process	regulation of seed germination
GO:0010431	Biological Process	seed maturation
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence Send to blast
MPTDLDNSST ASDPDAEVIA LSPKTLMATN RFVCEICSKG FQRDQNLQLH RRGHNLPWKL 60 RQRSSKEVKK RVYVCPEVSC VHHDPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKKYAVQ 120 SDWKAHSKIC GTREYKCDCG TLFSRRDSFI THRAFCDALA EESAKAHTPT AAAAATAVNL 180 NSESDPKTQS ANSPPQAPPP PPPQAAAPSQ PTTSSVPSMS AGVLSSSLPT QSTVRELPEN 240 PTQVVEEVQV VVGRKGNCSS SSSSNGSTSS GVFASLFTSS TTSASLQPPQ QPAFTDLIRA 300 MGHPDQSNDL APSSSMEPIS LGLSTSHGSS IFESAGHERR QYAPPPQPAM SATALLQKAA 360 QMGPAETNAS LLRGFGIMSS ASSSVQQETM QWNQRPAEPD NAPVAAGLGL GLPCDGGSGW 420 KELMMESPSM FGPKQTTLDL LGLGMAAGNN PSSGLSALIT SIGGGLDVAA AAASYGGGEY 480 SGKDLARSS*

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence Send to blast

MPTDLDNSST ASDPDAEVIA LSPKTLMATN RFVCEICSKG FQRDQNLQLH RRGHNLPWKL  60
RQRSSKEVKK RVYVCPEVSC VHHDPSRALG DLTGIKKHFC RKHGEKKWKC DKCSKKYAVQ  120
SDWKAHSKIC GTREYKCDCG TLFSRRDSFI THRAFCDALA EESAKAHTPT AAAAATAVNL  180
NSESDPKTQS ANSPPQAPPP PPPQAAAPSQ PTTSSVPSMS AGVLSSSLPT QSTVRELPEN  240
PTQVVEEVQV VVGRKGNCSS SSSSNGSTSS GVFASLFTSS TTSASLQPPQ QPAFTDLIRA  300
MGHPDQSNDL APSSSMEPIS LGLSTSHGSS IFESAGHERR QYAPPPQPAM SATALLQKAA  360
QMGPAETNAS LLRGFGIMSS ASSSVQQETM QWNQRPAEPD NAPVAAGLGL GLPCDGGSGW  420
KELMMESPSM FGPKQTTLDL LGLGMAAGNN PSSGLSALIT SIGGGLDVAA AAASYGGGEY  480
SGKDLARSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-35	104	165	3	64	Zinc finger protein JACKDAW
5b3h_F	3e-35	104	165	3	64	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00592	DAP	Transfer from AT5G66730	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr029706.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ860117	2e-88	JQ860117.1 Pyrus pyrifolia ENY mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018503025.1	0.0	PREDICTED: protein indeterminate-domain 2-like
Refseq	XP_018503026.1	0.0	PREDICTED: protein indeterminate-domain 2-like
Swissprot	Q9LVQ7	1e-164	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A498KLL2	0.0	A0A498KLL2_MALDO; Uncharacterized protein
STRING	XP_009356670.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2218	32	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	6e-99	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]