PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr029794.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 589aa    MW: 64031.4 Da    PI: 6.5926
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr029794.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.21.1e-30231288260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  dDgynWrKYGqK+vkg efprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Pbr029794.1 231 DDGYNWRKYGQKHVKGCEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIIYKGTHDHPK 288
                  8****************************************.***************85 PP
2WRKY106.21.7e-33406464159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Pbr029794.1 406 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 464
                  59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182906.15E-24229289IPR003657WRKY domain
SMARTSM007748.4E-33230288IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.1E-26230289IPR003657WRKY domain
PfamPF031061.4E-23231287IPR003657WRKY domain
PROSITE profilePS5081122.355231289IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-37391466IPR003657WRKY domain
SuperFamilySSF1182902.35E-29398466IPR003657WRKY domain
PROSITE profilePS5081138.825401466IPR003657WRKY domain
SMARTSM007743.1E-39406465IPR003657WRKY domain
PfamPF031063.6E-26407464IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MDATALGHPS GPSDGVDQGL TDFQPGSDPT LFSTSAAASG GAKYKLMSPA KLPISRSPCL  60
TIPHGLSPTS FLESPVLLSN MKAEPSPTTG SFLKPQMVYG SLSSTTYSAT TVCSDFNTSD  120
ERNSGSFEFK PHARSNMVTT DYNHYGNEQP LQIQGQAQPQ SHMSPPLAKN EMAVSSNEFS  180
LSAPVHTVTA GASAPAEGDS GELTQREHPN PGVQTSQCDN KGNGPSVISS DDGYNWRKYG  240
QKHVKGCEFP RSYYKCTHPN CEVKKLFERS HDGQITEIIY KGTHDHPKPQ PSRRYNTGAM  300
MPPQEERSDK ASSLTVRDDK PSGIYGQMSS NNEPSSTPEL SPVTGNDDNV EGTGSLSNRL  360
PDEADDDDPF SKRRRTDVGG IDVTPIVKPI REPRVVVQTL SEVDILDDGY RWRKYGQKVV  420
RGNPNPRSYY KCTNAGCPVR KHVERASHDP KAVITTYEGK HNHDVPTAKT SSHDASGPTT  480
VNVLSRIRSE ESDTISLDLG VGTTSGGENR SNEHLQLHSE LVERQSRTNS NFRVENTPIS  540
TYYGVLIGST NQYGSRENPS ESRSIEVPPL NHSSYPYPQN MGRVLTGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-36231466877Probable WRKY transcription factor 4
2lex_A2e-36231466877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr029794.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009338896.10.0PREDICTED: probable WRKY transcription factor 20 isoform X1
RefseqXP_009338899.10.0PREDICTED: probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLA0A498IH750.0A0A498IH75_MALDO; Uncharacterized protein
STRINGXP_009338896.10.0(Pyrus x bretschneideri)
STRINGXP_009338899.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39463463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein