PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr029833.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 252aa    MW: 27569.4 Da    PI: 9.1189
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr029833.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-1895142455
          AP2   4 kGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa a+++a+++++g
  Pbr029833.1  95 RGVRRRP-WGKWAAEIRDPV----KaARVWLGTFDTAEAAALAYDKAALNFKG 142
                  8******.**********64....55***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.98693150IPR001471AP2/ERF domain
SMARTSM003807.0E-3493156IPR001471AP2/ERF domain
PRINTSPR003676.6E-1094105IPR001471AP2/ERF domain
CDDcd000184.62E-2295151No hitNo description
Gene3DG3DSA:3.30.730.102.2E-3095151IPR001471AP2/ERF domain
PfamPF008473.2E-1295142IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-2195151IPR016177DNA-binding domain
PRINTSPR003676.6E-10116132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MDRKHGKRPL ASVESEEKEE DQIFPVYSTR SQQDTSAMVS ALAQVIGKNS DQSNNALDQV  60
QRINPLITSQ SSPTETQSQP VLLQDQGNLR RQHDRGVRRR PWGKWAAEIR DPVKAARVWL  120
GTFDTAEAAA LAYDKAALNF KGSKAKLNFP ERVQGSSESG CLTLITTDQQ NSLNISPPQP  180
NITRPTSSSA FDCTQYNNVT SSASLLSSSS MPSQQVAELP SFSMQFGSSF SSSSSGPPHK  240
YRKDFDSSHS R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2492153163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr029833.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009339033.10.0PREDICTED: ethylene-responsive transcription factor ERF114-like
SwissprotQ9FH547e-53EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A498JQ021e-146A0A498JQ02_MALDO; Uncharacterized protein
STRINGXP_009339033.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07310.12e-44ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]