PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr029840.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 215aa    MW: 23421.9 Da    PI: 9.5172
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr029840.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.71.7e-1956105255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+W++eIrdp+    + +r++lg+f+tae Aa a+++a+++++g
  Pbr029840.1  56 HYRGVRRRP-WGKWASEIRDPV----KaARVWLGTFDTAEAAALAYDKAALQFKG 105
                  69*******.**********64....55***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.90E-2255114No hitNo description
PROSITE profilePS5103224.67156113IPR001471AP2/ERF domain
SMARTSM003804.9E-3656119IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-2256114IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-3256114IPR001471AP2/ERF domain
PfamPF008471.1E-1256105IPR001471AP2/ERF domain
PRINTSPR003671.3E-115768IPR001471AP2/ERF domain
PRINTSPR003671.3E-117995IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MVSALAQVIG KNSDQINNPL DQVQGINPLI TSQSSPTETQ SQPVLLQDQG NLRRQHYRGV  60
RRRPWGKWAS EIRDPVKAAR VWLGTFDTAE AAALAYDKAA LQFKGNKAKL NFPERVQGSS  120
ESGCLTLITT DQQDSLNINP PHPNITRPTS SSVFDCTQYN NVTSSTSLLS SSSMPSQQAA  180
ELPSFSMQFG SSFSSSSSGP SHKYRKDFDS SHSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-2655116163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator of cell proliferation and axillary bud outgrowth. Involved in maintaining the structure of the shoot apical meristem as well as plastochron and phyllotaxy. Activates several genes involved in cell cycle regulation and dormancy breaking, including CYCD3-3, DPA, and BARD1. Strongly down-regulates DRM1, DRMH1, MARD1 and several genes encoding different types of cell wall-remodeling proteins. {ECO:0000269|PubMed:23616605}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr029840.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Transiently up-regulated 6 to 15 hours after decapitation. {ECO:0000269|PubMed:23616605}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018499028.11e-157PREDICTED: ethylene-responsive transcription factor ERF114-like
SwissprotQ9FH546e-45EF114_ARATH; Ethylene-responsive transcription factor ERF114
TrEMBLA0A498JQ021e-123A0A498JQ02_MALDO; Uncharacterized protein
STRINGXP_009339054.11e-157(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98534115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.13e-35ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]