PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr029956.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 237aa    MW: 26719.1 Da    PI: 4.8218
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr029956.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM96.63.9e-30421741128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknr.atksgyWkatgkdkevls 94 
                  lp G+rF+Pt++e+vv++L +k+ ++ +++   ikevd+y+++P++Lp+   k++a+ +  y+F++r+   a++ +  + a++ gyWk    + evl 
  Pbr029956.1  42 LPLGYRFNPTEDEIVVYFLFNKIMDRAMPTYGLIKEVDVYEYDPHQLPNgdfKHNAGCNAAYYFANREPFDASEGKIIKtAANGGYWKVIDDEYEVLF 139
                  699***************************999***************5455666677788*******999976666665999************999 PP

          NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  k ++  vg   ++ fy+g+ap+g+kt  vm+eyrl
  Pbr029956.1 140 KdSEVIVGFEAVMNFYEGKAPNGTKTPFVMNEYRL 174
                  8455669**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-3339202IPR003441NAC domain
PROSITE profilePS5100535.29642203IPR003441NAC domain
PfamPF023651.4E-1443174IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MASSASSQSS SASSQSADKY EGFDLLKCST VQEGKKEAEV RLPLGYRFNP TEDEIVVYFL  60
FNKIMDRAMP TYGLIKEVDV YEYDPHQLPN GDFKHNAGCN AAYYFANREP FDASEGKIIK  120
TAANGGYWKV IDDEYEVLFK DSEVIVGFEA VMNFYEGKAP NGTKTPFVMN EYRLNPRVVP  180
AHVLNDSIRN KIERYVVCRI INEEVSNQPV IDYRKESLEL LLKYASAGTV KDVEPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-22322045169Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr029956.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1981260.0KF198126.1 Malus hupehensis NAC domain protein (NAC119) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009356386.11e-176PREDICTED: NAC transcription factor 29-like
RefseqXP_009356387.11e-176PREDICTED: NAC transcription factor 29-like
RefseqXP_009356388.11e-176PREDICTED: NAC transcription factor 29-like
TrEMBLA0A498IBU21e-157A0A498IBU2_MALDO; Uncharacterized protein
STRINGXP_009356386.11e-175(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15772611
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.19e-28NAC-like, activated by AP3/PI