PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr029990.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MIKC_MADS
Protein Properties Length: 240aa    MW: 28027.9 Da    PI: 7.9117
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr029990.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.78.4e-30959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 krienk+nrqvtfskR +g+lKKA+E+SvLCda+va+i+fs++gkl+ey++
  Pbr029990.1  9 KRIENKINRQVTFSKRSTGLLKKAHEISVLCDAQVALIVFSNKGKLFEYAT 59
                 79***********************************************86 PP
2K-box981.4e-32811747100
        K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                  ++ + + + +++ e+++Lk+++e Lqr++Rh+lGedL+sL+l+e+q+LeqqL+++ k+iR +Kn+l++e+i elqkkek++qe+n+ L kk++e
  Pbr029990.1  81 VEPDFESQGNWTFEYSRLKAKVEVLQRNHRHYLGEDLDSLTLREIQSLEQQLDTAHKQIRLRKNQLMHESITELQKKEKAIQEQNNLLAKKIKE 174
                  5545566789*********************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.413161IPR002100Transcription factor, MADS-box
SMARTSM004322.9E-38160IPR002100Transcription factor, MADS-box
CDDcd002651.28E-40279No hitNo description
SuperFamilySSF554551.96E-33291IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-30323IPR002100Transcription factor, MADS-box
PfamPF003192.6E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-303859IPR002100Transcription factor, MADS-box
PfamPF014863.3E-2787172IPR002487Transcription factor, K-box
PROSITE profilePS5129715.86688178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009933Biological Processmeristem structural organization
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRSTGLLK KAHEISVLCD AQVALIVFSN KGKLFEYATD  60
SCMEQILERY ERYSYAERQL VEPDFESQGN WTFEYSRLKA KVEVLQRNHR HYLGEDLDSL  120
TLREIQSLEQ QLDTAHKQIR LRKNQLMHES ITELQKKEKA IQEQNNLLAK KIKEKEKTAA  180
QPEVQNWEQQ NHDLDLLPQP LPCLNIGGTQ QDEFLQVRRN QLDLTLEPFY SCHLGCFAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-21174173MEF2 CHIMERA
6byy_B4e-21174173MEF2 CHIMERA
6byy_C4e-21174173MEF2 CHIMERA
6byy_D4e-21174173MEF2 CHIMERA
6bz1_A5e-21174173MEF2 CHIMERA
6bz1_B5e-21174173MEF2 CHIMERA
6bz1_C5e-21174173MEF2 CHIMERA
6bz1_D5e-21174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00096ChIP-seqTransfer from AT1G69120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr029990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP1640040.0KP164004.1 Pyrus pyrifolia clone PpAP1-3 AP1 MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009356440.11e-178PREDICTED: truncated transcription factor CAULIFLOWER A-like
SwissprotQ6E6S71e-133AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A0D4ZXU91e-176A0A0D4ZXU9_PYRPY; AP1 MADS-box protein
STRINGXP_009356440.11e-177(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58832119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-106MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]