PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr030103.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 178aa    MW: 20539.1 Da    PI: 7.0158
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr030103.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM94.51.7e-2981421128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevd...iykvePwdLpkkvkaeekewyfFskrdkkyat.gkrknratk..sgyWkatgkdkev 92 
                  lp+GfrF Ptdeelv++yL +kv ++++++++ i+e+d    y  +P++L  +++ +e+ew+fF++++++++  ++r+ r++    g+Wk  g++ ++
  Pbr030103.1   8 LPVGFRFMPTDEELVTHYLMNKVFHRPVPAAQEIREIDaagFYGGHPKNLV-TFSCGEREWFFFIHQSESSHAsQRRSIRVVGngLGFWKPNGSEDPI 104
                  79*************************888776777763337888*****6.777899***999998887765156677776634678********** PP

          NAM  93 lskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                  ++++g++   k +L+++  + + +++++t+W m ey l
  Pbr030103.1 105 CDEDGNAFASKISLTYFsrTSSLSRAKRTHWKMVEYYL 142
                  *****************5434678899*********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.01E-304169IPR003441NAC domain
PROSITE profilePS5100532.2548171IPR003441NAC domain
PfamPF023651.6E-179141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MIINSDQLPV GFRFMPTDEE LVTHYLMNKV FHRPVPAAQE IREIDAAGFY GGHPKNLVTF  60
SCGEREWFFF IHQSESSHAS QRRSIRVVGN GLGFWKPNGS EDPICDEDGN AFASKISLTY  120
FSRTSSLSRA KRTHWKMVEY YLHEHDHVES NTEEKYQVQR REVVLCRMLR GTDYAGF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-15716814165Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr030103.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021820730.17e-85NAC transcription factor 29-like
TrEMBLA0A498I5K01e-103A0A498I5K0_MALDO; Uncharacterized protein
STRINGXP_004301123.14e-63(Fragaria vesca)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144391218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.16e-20NAC domain containing protein 90