PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr030135.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB
Protein Properties Length: 327aa    MW: 36297.7 Da    PI: 7.4771
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr030135.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.46.9e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd +l+ +++++G g+W++ +++ g++R++k+c++rw +yl
      Pbr030135.1 14 RGAWTPEEDRKLLAYIQLHGHGSWRSLSQKAGLKRCGKSCRLRWINYL 61
                     89********************************************97 PP
2Myb_DNA-binding48.91.5e-1567112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++  Ed+ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
      Pbr030135.1  67 RGNFSLYEDQTIIQLHALLGNR-WSAIATYLP-KRTDNEIKNYWNTHL 112
                      899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.049961IPR017930Myb domain
SuperFamilySSF466893.13E-3011108IPR009057Homeodomain-like
SMARTSM007176.3E-151363IPR001005SANT/Myb domain
PfamPF002491.0E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-231568IPR009057Homeodomain-like
CDDcd001677.37E-121661No hitNo description
PROSITE profilePS5129424.53562116IPR017930Myb domain
SMARTSM007179.8E-1566114IPR001005SANT/Myb domain
PfamPF002491.2E-1467112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-2569116IPR009057Homeodomain-like
CDDcd001677.48E-1174112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MRKSGSYAAS GIKRGAWTPE EDRKLLAYIQ LHGHGSWRSL SQKAGLKRCG KSCRLRWINY  60
LRPDIKRGNF SLYEDQTIIQ LHALLGNRWS AIATYLPKRT DNEIKNYWNT HLKKRLAKIG  120
LDPATHKPKA AILGSANGDP KNLSNLSHIA QWESARIQAE ARFVNESKPR MHASAPAASL  180
SDEHHQFAPP LVPQCLDILR ASAWESLISM SKSSSRSAAL IDDTNGQGNV SFGDHHHVHD  240
HGVNMDGQDY GPNFEAPTYI PTSDQQLSSL MGYDDATLMS VPTGSMDIYE LFGQYCGNEC  300
SESLAALHHN LGSEFEDAWN SLEQIM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr030135.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009339144.10.0PREDICTED: myb-related protein Hv1-like
SwissprotQ9LE634e-85MY106_ARATH; Transcription factor MYB106
TrEMBLA0A498JND10.0A0A498JND1_MALDO; Uncharacterized protein
STRINGXP_009339144.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83534127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-86myb domain protein 16