PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr030160.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 280aa    MW: 31227.2 Da    PI: 8.0407
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr030160.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.9e-192777155
          AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +++ GVr+++ +g+WvAeI+d      k+ r +lg+f taeeAa+a+++a+  l+g
  Pbr030160.1 27 CKFVGVRQRP-SGKWVAEIKDtT----KKIRMWLGTFETAEEAARAYDEAAYLLRG 77
                 799*******.7*********33....36**********************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.8E-132777IPR001471AP2/ERF domain
CDDcd000182.65E-322787No hitNo description
PROSITE profilePS5103220.4552885IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-202886IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-282886IPR001471AP2/ERF domain
SMARTSM003806.3E-372891IPR001471AP2/ERF domain
PRINTSPR003674.8E-82940IPR001471AP2/ERF domain
PRINTSPR003674.8E-85167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MEHQAPKQQK GVANKQTRFK ERTKSKCKFV GVRQRPSGKW VAEIKDTTKK IRMWLGTFET  60
AEEAARAYDE AAYLLRGSNT RTNFATHVPS NSPLSLKIRN LLNQKKSLKQ CPVSSTPNSL  120
NSTPTATSTR TSNKYTTFSD GSAISIATFS ETCLPNCKSQ KNVQVFDDAY RPDISNCIDD  180
LQPGLFRNHF GLQWPLLTGF DQLPITHEGM DLAKGNAVTV QPSVAVEPEV TEFECLEVER  240
QMSASFYTMN AVNEYFDNEY NAGDALWDLP SLSQLFCLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-162990668ATERF1
3gcc_A5e-162990668ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr030160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009339174.10.0PREDICTED: ethylene-responsive transcription factor RAP2-11-like
TrEMBLA0A498IKG40.0A0A498IKG4_MALDO; Uncharacterized protein
STRINGXP_009339174.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33413069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-50related to AP2 11