PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr030208.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 169aa    MW: 18158.2 Da    PI: 9.7811
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr030208.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.96.1e-192574255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 +y+GVr ++ +gr++AeIrdp   gk++r++lg+f+ta +Aa+a+++a+++++g
  Pbr030208.1 25 RYRGVRKRP-WGRYAAEIRDP---GKKTRVWLGTFDTAVDAARAYDKAAREFRG 74
                 59*******.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.2E-372588IPR001471AP2/ERF domain
CDDcd000183.03E-302582No hitNo description
PROSITE profilePS5103223.2612582IPR001471AP2/ERF domain
PfamPF008473.2E-122574IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-212583IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.0E-322583IPR001471AP2/ERF domain
PRINTSPR003671.0E-102637IPR001471AP2/ERF domain
PRINTSPR003671.0E-104864IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MAPTTAKSLS KTVSEDPNPT SNEIRYRGVR KRPWGRYAAE IRDPGKKTRV WLGTFDTAVD  60
AARAYDKAAR EFRGGKAKTN FPTPSELQLD AVNIVNMNNA AKSAAATNAD GAAAFQLARE  120
TCRFDRPAPI SGSAHSDYSA SSVVDFEPSS RNVRLDLDLN LPAPSEVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-202682360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-202682663ATERF1
3gcc_A2e-202682663ATERF1
5wx9_A9e-2025871477Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr030208.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324341e-151GU732434.1 Malus x domestica AP2 domain class transcription factor (AP2D10) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018499085.11e-107PREDICTED: ethylene-responsive transcription factor 4-like
TrEMBLD5L0Z43e-64D5L0Z4_MALDO; AP2 domain class transcription factor
STRINGXP_009339319.11e-117(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-28erf domain protein 9