PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr030226.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

HD-ZIP

Protein Properties

Length: 170aa MW: 19505.2 Da PI: 7.5751

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr030226.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	52.6	7.6e-17	16	69	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++ ++t++q++ Le F++n+++ e++ LAk+l ++ rqV +W+qN+Ra++k Pbr030226.1 16 SKKRLTQDQVKLLEISFASNNKLEPERKLLLAKQLAIPPRQVAIWYQNKRARWK 69 56789************************************************9 PP
2	HD-ZIP_I/II	107.5	9.8e-35	16	107	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 k+rl+++qvklLE sF +++kLeperK la++L + prqva+W+qn+RAR+kt+ lE dy+a+++++++ +e+ rLek+ve+Lr elk+ Pbr030226.1 16 SKKRLTQDQVKLLEISFASNNKLEPERKLLLAKQLAIPPRQVAIWYQNKRARWKTQSLEFDYSAIQAKLESTLAEKMRLEKDVERLRGELKK 107 59**************************************************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.402	11	71	IPR001356	Homeobox domain
SMART	SM00389	7.9E-13	13	75	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-16	14	80	IPR009057	Homeodomain-like
CDD	cd00086	1.45E-12	14	72	No hit	No description
Pfam	PF00046	3.0E-14	15	69	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.0E-17	18	78	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	46	69	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MDFFPTSNHK NQFKHSKKRL TQDQVKLLEI SFASNNKLEP ERKLLLAKQL AIPPRQVAIW 60 YQNKRARWKT QSLEFDYSAI QAKLESTLAE KMRLEKDVER LRGELKKAHE IVLALNQQSQ 120 MFPDNPVICS VFDSSNCSDE GVGSSSLQPH EDDEVKQLEE LYASLIGMQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr030226.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009339311.1	1e-123	PREDICTED: homeobox-leucine zipper protein ATHB-52-like
TrEMBL	A0A498K457	1e-115	A0A498K457_MALDO; Uncharacterized protein
STRING	XP_009339311.1	1e-123	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11011	22	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	9e-37	homeobox protein 52