PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr030258.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 317aa    MW: 35182.2 Da    PI: 8.4116
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr030258.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.81e-07255299143
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                      + +W+  Ed  l++a k ++++   +W++Ia+ ++ g++   c+ r
      Pbr030258.1 255 KESWSSTEDIALLNALKAFPKEvsmRWEKIAAAVP-GKSKAACVKR 299
                      578********************************.*******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0021160213IPR001005SANT/Myb domain
CDDcd001670.00475163210No hitNo description
PROSITE profilePS500904.565164197IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.0E-7249300IPR009057Homeodomain-like
PROSITE profilePS500907.445250299IPR017877Myb-like domain
SuperFamilySSF466891.4E-9253303IPR009057Homeodomain-like
SMARTSM007172.7E-6254306IPR001005SANT/Myb domain
PfamPF002492.0E-6255299IPR001005SANT/Myb domain
CDDcd001672.85E-5257299No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048767Biological Processroot hair elongation
GO:0005783Cellular Componentendoplasmic reticulum
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MEFLDEDARP RFLFQSKAVA SSATDLQPHY KNLSKPFIFF TILISFLLMG LAFFLLSEPY  60
QSLLIWAALA LLIGPFAPAP VTGGDIRVGH GPVVDFPEIA TQVEDESKKR VSQKRSKPRR  120
FDELGADSTP MPETISGSVI EKKRSEASEG NGNGSVFFGE ETEWVEEDVE FLKKLLLKHP  180
VGKLRRWEVI SESFQGKHKV ESVIKKAKEL GEKKVSDSDS YAEFLKKRKP NDKKTESGNQ  240
ELGDESVADN GEVKKESWSS TEDIALLNAL KAFPKEVSMR WEKIAAAVPG KSKAACVKRV  300
AELKKGFRSA KASNEE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr030258.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009339397.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
RefseqXP_009339398.10.0PREDICTED: dnaJ homolog subfamily C member 2-like
TrEMBLA0A498JNG80.0A0A498JNG8_MALDO; Uncharacterized protein
STRINGXP_009339397.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106861418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45420.16e-69MYB_related family protein