PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr030271.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family B3
Protein Properties Length: 229aa    MW: 26119 Da    PI: 10.0436
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr030271.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.63.1e-20102195398
                  EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ++ +++++ + + l l  kfa+eh +   ++  ++l+ + gr+W vkl ++ +++   +++GW +Fv++ngL+ gD++vF+l++++e    v +fr
  Pbr030271.1 102 TIVMHPSYIQANTLNLEAKFAREHLLYR-THDNVILRVSGGRTWPVKL-HQYSKNVLKFQSGWMKFVQDNGLEIGDVCVFMLINNTEHLIDVVIFR 195
                  5667788888889***********4443.3348***************.455555599*************************9866556666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.7E-2493195IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-2394195IPR015300DNA-binding pseudobarrel domain
CDDcd100172.37E-2099195No hitNo description
SMARTSM010192.0E-13100197IPR003340B3 DNA binding domain
PROSITE profilePS5086313.86100197IPR003340B3 DNA binding domain
PfamPF023621.3E-17101195IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MSQMEETDED DDCVEILDDS PPCLKTKKKS PIATHRHKKN RTGSISTSEN HMKKFGGSSW  60
TKELVKRRPD QVPRMMNPLT VSGTNRALQR ARAFKSEYPC CTIVMHPSYI QANTLNLEAK  120
FAREHLLYRT HDNVILRVSG GRTWPVKLHQ YSKNVLKFQS GWMKFVQDNG LEIGDVCVFM  180
LINNTEHLID VVIFRGRETA DCTFSPGKAR SISKDQFKSK NKKVAGWM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr030271.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009365446.11e-139PREDICTED: B3 domain-containing protein Os11g0197600-like
RefseqXP_028953967.11e-136B3 domain-containing protein LOC_Os12g40080-like
TrEMBLA0A498HHW41e-133A0A498HHW4_MALDO; Uncharacterized protein
STRINGXP_009365446.11e-139(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14896412
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.14e-13related to vernalization1 1