PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr030418.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 265aa    MW: 28897 Da    PI: 6.3672
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr030418.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.7e-20100149255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr+++ +g+W+AeIrdp+    r +r++lg+f tae+Aa+a+++a+ +++g
  Pbr030418.1 100 KYRGVRQRP-WGKWAAEIRDPR----RaARVWLGTFETAEDAARAYDKAAVEFRG 149
                  8********.**********82....48***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103225.383100157IPR001471AP2/ERF domain
PfamPF008472.9E-13100149IPR001471AP2/ERF domain
SMARTSM003801.2E-36100163IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23100158IPR016177DNA-binding domain
CDDcd000186.38E-33100157No hitNo description
Gene3DG3DSA:3.30.730.104.6E-33100157IPR001471AP2/ERF domain
PRINTSPR003674.2E-12101112IPR001471AP2/ERF domain
PRINTSPR003674.2E-12123139IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
MPFHANRIQQ EQEHCIMVSA LKHVISGGSI SGPTPQPMPA VYNATSSVST SGTQLAAGQP  60
AQQDNYFSPS LPNQNRNQQL SLGTGFVGMN APTTRKSKNK YRGVRQRPWG KWAAEIRDPR  120
RAARVWLGTF ETAEDAARAY DKAAVEFRGN KAKLNFPSDP GGHIVTTNDS SSSGTSANAS  180
INPGLINKQK QKNISEIGVM EKEEEKVDQV KLNQATQPEN MQLGVVATAE SSVGHEEDDQ  240
FLLWDNGWLR DGEDDDLMAW LSTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-24101157360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr030418.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU7324701e-113GU732470.1 Malus x domestica AP2 domain class transcription factor (AP2D46) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009375704.10.0PREDICTED: ethylene-responsive transcription factor SHINE 2-like
TrEMBLA0A498HV531e-169A0A498HV53_MALDO; Uncharacterized protein
STRINGXP_009375704.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50080.11e-25ethylene response factor 110