PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr030435.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 214aa    MW: 24794.5 Da    PI: 9.2915
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr030435.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF214.2e-071159350
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEEE CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss.tgklyeys 50
                 i n+  r+ t  + r+ ++KK  E+ +LCd+    i++ + tg+  +++
  Pbr030435.1 11 IVNDNARKATSKRSRESLFKKMREITTLCDVGGFTIVYDPaTGEPSTWP 59
                 567777888866669****************877776654267777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.998148IPR002100Transcription factor, MADS-box
SMARTSM004323.0E-6160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-16394IPR002100Transcription factor, MADS-box
PfamPF003191.5E-81158IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MPRSKVKLAW IVNDNARKAT SKRSRESLFK KMREITTLCD VGGFTIVYDP ATGEPSTWPE  60
LPLLQQLIAR YQSIPFPERL AKMTDQETYL KEKVAKLKDR INKIQRENFE VEMNDIMHQI  120
TQNGKPFHTF EDRELTNLLL FTEEKMKEIQ KRIKTMEPEV NVPPSGGGEE FNMTVPEHGE  180
DRREYLLKYL EWAKRKLAME NAAGASSSTK QFP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr030435.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009339458.21e-134PREDICTED: MADS-box transcription factor PHERES 2-like
TrEMBLA0A251N9543e-65A0A251N954_PRUPE; Uncharacterized protein
TrEMBLM5W7K72e-65M5W7K7_PRUPE; Uncharacterized protein (Fragment)
STRINGXP_009339458.11e-158(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110141938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-25AGAMOUS-like 80