PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr030636.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family RAV
Protein Properties Length: 315aa    MW: 35670.5 Da    PI: 8.4618
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr030636.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.28.8e-133179155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 s+ykGV    ++grW A+I++      + r++lg+f+ +eeAak ++ a +k++g
  Pbr030636.1 31 SRYKGVV-PQSNGRWGAQIYEK-----SNRVWLGTFDDEEEAAKTYDIASLKIRG 79
                 78****7.7779*********4.....6***********************9997 PP
2B391.94.6e-29168271199
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---...--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkke.esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                  f+kv tpsdv++++r+v+pk++ae+h       g     +++ l++ede g++W++ ++y+ +s++yvl+kGW +Fvk+++Lk+gD+v F+++  +++
  Pbr030636.1 168 FEKVATPSDVGRLNRMVIPKRHAEKHfqvhqsvG---FgKGVLLKFEDEVGKVWRFGYCYWSSSQSYVLSKGWIRFVKEKKLKVGDVVRFERSVGEDK 262
                  89************************77665442...04789*************************************************8866999 PP

                  ..EEEEE-S CS
           B3  91 elvvkvfrk 99 
                  +l++  +++
  Pbr030636.1 263 KLFIDCRSR 271
                  999998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-143184IPR016177DNA-binding domain
PfamPF008471.4E-63179IPR001471AP2/ERF domain
CDDcd000183.79E-213184No hitNo description
PROSITE profilePS5103218.0973287IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-163284IPR001471AP2/ERF domain
SMARTSM003802.5E-173291IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.3E-35161272IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.05E-28165270IPR015300DNA-binding pseudobarrel domain
CDDcd100179.97E-27167266No hitNo description
PROSITE profilePS5086313.451168272IPR003340B3 DNA binding domain
SMARTSM010192.2E-21168272IPR003340B3 DNA binding domain
PfamPF023621.2E-26168271IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MDLISCWNAS TRDYSTVNQA NGASSNKLSS SRYKGVVPQS NGRWGAQIYE KSNRVWLGTF  60
DDEEEAAKTY DIASLKIRGL DAITQISRNQ MKPYECDVTE ALFLESHSKA EIVDMLRKHS  120
YANELEMYKH KLYNGCAACA LGLDDGGRRM KCYHDLMDTC SSERELLFEK VATPSDVGRL  180
NRMVIPKRHA EKHFQVHQSV GFGKGVLLKF EDEVGKVWRF GYCYWSSSQS YVLSKGWIRF  240
VKEKKLKVGD VVRFERSVGE DKKLFIDCRS RNLDISGIGE MHGTVGDPPA TVQDDGVVRL  300
FGVNISRKHV HCRE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-4516527711126DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Transcriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences (Probable). Functionally redundant with TEM1. {ECO:0000250, ECO:0000269|PubMed:18718758, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr030636.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009357037.10.0PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like
SwissprotP822804e-92RAV2_ARATH; AP2/ERF and B3 domain-containing transcription repressor RAV2
TrEMBLA0A498J5530.0A0A498J553_MALDO; Uncharacterized protein
STRINGXP_009357037.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.21e-94related to ABI3/VP1 2
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  3. Sun YW, et al.
    Attenuation of Histone Methyltransferase KRYPTONITE-mediated transcriptional gene silencing by Geminivirus.
    Sci Rep, 2015. 5: p. 16476
    [PMID:26602265]
  4. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  5. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]
  6. Li P, et al.
    The Arabidopsis UGT87A2, a stress-inducible family 1 glycosyltransferase, is involved in the plant adaptation to abiotic stresses.
    Physiol Plant, 2017. 159(4): p. 416-432
    [PMID:27747895]