PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr030666.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 263aa    MW: 30175.7 Da    PI: 9.7876
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr030666.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.83.4e-101462155
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 s+ykGV   + +grW A+I++      + r+ lg+f  +eeAak ++ a +k++g
  Pbr030666.1 14 SRYKGVVLQS-NGRWGAQIYEK-----SHRVGLGTFKDEEEAAKTCDIASLKFRG 62
                 79****9887.8*********4.....6**********************99997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-41462IPR001471AP2/ERF domain
CDDcd000186.00E-181468No hitNo description
SuperFamilySSF541713.07E-111468IPR016177DNA-binding domain
PROSITE profilePS5103215.6721570IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-121568IPR001471AP2/ERF domain
SMARTSM003802.0E-111574IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.104.9E-8141191IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-8143218IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MEQTVQVQTR CLPSRYKGVV LQSNGRWGAQ IYEKSHRVGL GTFKDEEEAA KTCDIASLKF  60
RGLDAITNNS RNKMKPYERD VIEALFLESH SKAEIVYMLR KHSYANELEI YKYKLYNGGA  120
VGLDDGGKHY LDLRDACSSW RQLLFEKVAT PSDVGRLNRM VIPKQHAEKR FQVHLCVGFG  180
KGVLLKFEDE EKKLKVGDVV RFERSVREDK KMFIYCRPRN LDISGIREMH GRVGDPLRTV  240
QDHGAVRLFG VNISRKPVHC RE*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr030666.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009357037.11e-135PREDICTED: AP2/ERF and B3 domain-containing transcription repressor RAV2-like
SwissprotQ9C6M53e-59RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLA0A498J5531e-133A0A498J553_MALDO; Uncharacterized protein
STRINGXP_009357037.11e-135(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-54RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]