PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr030871.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 467aa    MW: 51476.2 Da    PI: 6.3134
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr030871.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.5e-06153175123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C++C++ F r  nL+ H r+H
  Pbr030871.1 153 YVCEICNQGFQRDQNLQMHRRRH 175
                  9*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.33E-5150176No hitNo description
Gene3DG3DSA:3.30.160.601.9E-5152175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.97153175IPR007087Zinc finger, C2H2
SMARTSM003550.0052153175IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280155175IPR007087Zinc finger, C2H2
PROSITE profilePS5174613.08167466IPR001932PPM-type phosphatase domain
SMARTSM003320.0012168421IPR001932PPM-type phosphatase domain
SuperFamilySSF816062.35E-19182310IPR001932PPM-type phosphatase domain
CDDcd001434.68E-20183310No hitNo description
Gene3DG3DSA:3.60.40.103.6E-22183305IPR001932PPM-type phosphatase domain
PfamPF004811.1E-13185310IPR001932PPM-type phosphatase domain
PROSITE patternPS010320223231IPR000222PPM-type phosphatase, divalent cation binding
SuperFamilySSF506302.6E-39299456IPR021109Aspartic peptidase domain
PROSITE profilePS5176725.476305466IPR033121Peptidase family A1 domain
CDDcd054718.82E-27305455No hitNo description
PfamPF145439.7E-34305464IPR032861Xylanase inhibitor, N-terminal
Gene3DG3DSA:2.40.70.105.7E-30306456IPR021109Aspartic peptidase domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0003824Molecular Functioncatalytic activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MVLTELAALY FSVSNQWFKF SSNLPSKPRS PILVFDSVYA LCDVGSPWRS EWKLFHCTIS  60
KLKTSQTWTR LEKHEWGDVF DILKRPRLVR GNGNKVLMVG GLKSSFSLNA SCSTILILKL  120
DLDSLEWDEA GTPDPDAEVV SRSPKTLLES DRYVCEICNQ GFQRDQNLQM HRRRHKVPWK  180
LLRREMEDAV AVIPNFMSRT CDHVGGCTAP GSRSSAEISP VHFFGVYDGH GGNQVAKFCA  240
ERTHEVIAQE WDRETIDGYE WRRKWEAAFS IGFEIADNEL MAESVAPEMV GSTAVVAVLS  300
ETGLYFAKLG IGSPSKDYFV QVDTGSDIMW VNCIDCTNCP TKSDIGVKLT LYDPKGSSSS  360
NAVTCNQEFC TSKYNGQLSG CRPDLLCQYD VTYGDGSATA GYFVKDTIQF DKGTNGSVVF  420
GCGAKQSGQL GKSSEALDGI LGFGQANSSV FSQLAAFRSK RAISLP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nmn_B3e-2218331023145Protein phosphatase 2C 56
3nmn_D3e-2218331023145Protein phosphatase 2C 56
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr030871.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150346e-36AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
STRINGXP_009339766.10.0(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.32e-32C2H2-like zinc finger protein