PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr031162.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 366aa    MW: 41757.2 Da    PI: 7.2636
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr031162.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.5e-05204223120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ++Cp C k+F+r  n++ H+
  Pbr031162.1 204 FSCPVCYKTFNRYNNMQMHM 223
                  89*****************9 PP
2zf-C2H214.50.00011288310123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C +Cgk F  + + ++H +++
  Pbr031162.1 288 FMCRKCGKAFAVRGDWRTHEKNC 310
                  89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.62E-5196226No hitNo description
Gene3DG3DSA:3.30.160.606.4E-6204223IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.45204226IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743204231IPR007087Zinc finger, C2H2
PROSITE patternPS000280206226IPR007087Zinc finger, C2H2
SuperFamilySSF576671.8E-6270308No hitNo description
Gene3DG3DSA:3.30.160.601.0E-5284308IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808288308IPR007087Zinc finger, C2H2
SMARTSM0035549288308IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MADYPYSSNF FPGLFKFNPL HRHHEHEPPP SNPQPPPHAS QSSPSYAHNF FLNQNHSFYF  60
PTHQQILNTR PPSPPLREAL PLLSRLNPTN QHHHHRDHED QQQHHHEDHQ HFKDQQDEED  120
GDGEDDASVT LHIGLPNPSA AEMASVLSAA ANSSSSEMSN NSTHHEKSDH GDHDSAGYPM  180
SCRLNKGQYW IPTPSQILIG PTQFSCPVCY KTFNRYNNMQ MHMWGHGSQY RKGPESLRGT  240
QPTGMLRLPC YCCTPGCRNN IDHPRAKPLK DFRTLQTHYK RKHGIKPFMC RKCGKAFAVR  300
GDWRTHEKNC GKLWYCICGS DFKHKRSLKD HIKAFGNGHA AYGIDGFEEE DEPASEVEQD  360
NESMQ*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr031162.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018499264.10.0PREDICTED: zinc finger protein WIP2 isoform X1
SwissprotQ9SVY11e-143ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A498I6B60.0A0A498I6B6_MALDO; Uncharacterized protein
STRINGXP_008240853.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-135C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]