PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr031344.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 1465aa    MW: 163764 Da    PI: 6.4819
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr031344.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.00019840861223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                  kC +C++ F ++ n++rHir+H
  Pbr031344.1 840 KCDKCPREFFSSINYRRHIRVH 861
                  7********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd019893.38E-3319167No hitNo description
Gene3DG3DSA:3.40.50.6201.1E-919136IPR014729Rossmann-like alpha/beta/alpha sandwich fold
SuperFamilySSF524023.1E-719136No hitNo description
PfamPF005823.7E-519137IPR006016UspA
Gene3DG3DSA:3.30.200.202.3E-20387472No hitNo description
SuperFamilySSF561122.02E-55395667IPR011009Protein kinase-like domain
PROSITE profilePS5001128.428413674IPR000719Protein kinase domain
PfamPF077141.3E-32418665IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
Gene3DG3DSA:1.10.510.104.4E-34473675No hitNo description
SuperFamilySSF578501.94E-19690754No hitNo description
PROSITE profilePS5169824.239692766IPR003613U box domain
Gene3DG3DSA:3.30.40.103.2E-22693755IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF045641.0E-13694753IPR003613U box domain
SMARTSM005043.7E-25696759IPR003613U box domain
PROSITE profilePS5015710.055839866IPR007087Zinc finger, C2H2
PROSITE patternPS000280841862IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0006950Biological Processresponse to stress
GO:0016567Biological Processprotein ubiquitination
GO:0005886Cellular Componentplasma membrane
GO:0004672Molecular Functionprotein kinase activity
GO:0004842Molecular Functionubiquitin-protein transferase activity
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1465 aa     Download sequence    Send to blast
MGSVGEVGEG RVLSDVEETI FVAVGKDLKQ SETTLAWAVK NFAGKRICLL HVHKPSLLLS  60
LSEGIGSASK LKQGAVKALQ GAERTKLRKL LDQYRMILTG AGVEANELWI EMGNVEEGIV  120
EIIARHHIRW LVMGAAADEH YSERLAEIKS RKAFFVCQKA ASSCHIWGDR EDESEIEIAP  180
PLLLMNSAFG TEQPEHLRSE STDSLRNLSS ADAEEDTSEL EQISGRSTPL MIDAEGEANG  240
ESYHSVEQAI VDTKNLKQKE LEETTRRWKE EDDEMEAKCK AKAFESLCTK EMSQRKEMEE  300
KLARLKQEID GVKDESEEFI RQLSMVEDKK LVLEKQLEAS QCEVKELEEK IISAAGLLMS  360
FREKRDTMKI EHRNAMRKVR RLETMINGEA ASFDQAEFPI FSFMEINEAT HNFDPSWKIK  420
EGRRGSVYKG ILRHMHVAIK MLPSYGSKTQ LDFEHEVEVL SRVRHPNLVT LIGTCPESRS  480
LVYEYLKNGC LEDLLACKDS TPPLPWQIRT SIATEICSAL RFLHSNIPCL VHGNLKPSNI  540
LFDANFVSKL INLGINSLIP QNENPTNFTK ICSDPNGAHV YMDPEYLETG KLTPESDVYS  600
FGIILLQLLT ARPLSGLVKD VKYALENDNF KALLDVSAGD WPLEQAKEMA YIALRCCENK  660
RLDRLDLLVA HEAMRASCAA SASCLVSKKL IRTPSHFLCP ILQEVMQDPH IAADGFTYEE  720
EAIRGWLKSG HNTSPMTNLE LEHCKLVPNY ALRDIWRSSG FVFLMSIAKP TTSDSLYAMK  780
SGGENDSIDT IIRQVAKEPS ISFSRAGDSP VPWIQLLHAL DQQELPGWPL HSPIKVQMQK  840
CDKCPREFFS SINYRRHIRV HHRLKKLDKD SSKNRELLRE FWDKLSPEEA KEVVSFNDVT  900
LEEVPGSSII KALTILIRKP GFSSLPHICL KAGSALLDIV QARPSRFPIS SQELFSILDD  960
ASEKTFLCGT AISMQRYVFD GEAGKIGLES KNLVACTSFL VEQILLKAWH ADKDAEALRL  1020
QKLLVEEEEA AQRRQEELLE RKRLKKLRQK EQKEKDQRHG EKVDVKENID ETLEAVPLVE  1080
TSSPSATFDS DTASSDALDH ARLSLEPFHF SNTGENADLE SQTGVSFGHV DSASGPNVER  1140
QLVQGNGSRR AVARWHMSPK SRRGVPNRFH DGHSSQTVKH SSIQHHGNHR DVRAASSGNR  1200
VWSRKPKPEY DGGSLKAGVQ KEASEPDQIK NHEVLIGSIP VNLGNFCQES NNLAGVHDDR  1260
PSEKGQMLKD NSQDKTNKPD LVQSGTNRST VKLWRPVSWN GTRGPTPIHN GSKESDINVV  1320
AEKGNSQSPY SENCKRSCVV DGHNDGNGNG STHPDETQSL GFSSRAAEDF LAQRWKEAIA  1380
ADHVELVLFQ DSEPPRCPDN QNDGEVGANH SLKSKRSILG NAENRLVDGE AFDLPTAGAA  1440
KVRRRTKQDK GVKIKYIPKH STVA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4u97_A6e-3739861317237Interleukin-1 receptor-associated kinase 4
4u97_B6e-3739861317237Interleukin-1 receptor-associated kinase 4
4u9a_A6e-3739861317237Interleukin-1 receptor-associated kinase 4
4u9a_B6e-3739861317237Interleukin-1 receptor-associated kinase 4
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
110391046ERKRLKKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr031344.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009340053.10.0PREDICTED: U-box domain-containing protein 32
TrEMBLA0A498KLN60.0A0A498KLN6_MALDO; Uncharacterized protein
STRINGXP_009340053.10.0(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.11e-111C2H2-like zinc finger protein