PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr031473.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 348aa    MW: 39127.5 Da    PI: 6.5243
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr031473.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF391e-123072749
                 HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
       SRF-TF  7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                  +++v+fskRr g++ KA+E +   da++av+++s+ g+ y +
  Pbr031473.1 30 NRKYVSFSKRRYGLFSKASEFCLKFDAQIAVLVLSPAGRPYSF 72
                 5789**********************************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.4E-8175IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.71E-1630102IPR002100Transcription factor, MADS-box
PfamPF003194.1E-143172IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.9463176IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MSRRRRAGQV IKLESQEGVD PRVVQQKELN RKYVSFSKRR YGLFSKASEF CLKFDAQIAV  60
LVLSPAGRPY SFGHSSVDAV LNRYFKIAQA PSTSRFTEDN QEEQRDKIQV LRKQLESHKK  120
RKREEEIAEK NKVAKVKESV EKELQTCKTV EELVAFKQKY LVLHENINKR FKQSQSPVSK  180
RQCISRDIVL EDNNAQHVSI RPILISKDTL PNTTLTTVGD DHDVGNGNSN DNGNGKGSFS  240
GNAEDLENFL LRQDVEDIGG VVDDTGYAAM LNYFIGEDGN DPNGAVDVSP AEHVFPPALK  300
ALPFDPVGSS DFTQHNISDD AANRYYGYLE DIINNSYSHQ DTSFNFN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr031473.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009340228.10.0PREDICTED: MADS-box transcription factor 50-like
TrEMBLA0A498IN381e-152A0A498IN38_MALDO; Uncharacterized protein
STRINGXP_009340228.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1884856
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.15e-17AGAMOUS-like 61