PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr031684.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 274aa    MW: 31104.7 Da    PI: 5.8396
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr031684.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.3e-174285146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg+ + eE+el+++++k+lG++ W++Ia +++ gRt++++k++w++
      Pbr031684.1 42 RGNISSEEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNT 85
                     7899******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.796136IPR017877Myb-like domain
SuperFamilySSF466891.51E-20783IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-112248IPR009057Homeodomain-like
PROSITE profilePS5129424.6193791IPR017930Myb domain
SMARTSM007179.3E-164189IPR001005SANT/Myb domain
PfamPF002491.3E-144285IPR001005SANT/Myb domain
CDDcd001679.22E-124687No hitNo description
Gene3DG3DSA:1.10.10.602.2E-214987IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MARPSSKSWV QININYFTAG LNRCGKSCRL RWLNYLRPGI KRGNISSEEE ELIIRLHKLL  60
GNRWSLIAGR LPGRTDNEIK NYWNTSLSKK TEQGSDKAPH ERSSTAKSNE YTPKPKSESK  120
SHRTVQVIRT KAFKCRKVVI PSHLDGHDQM VDRSNVNPGL VPCESPSPSG AQDHQEDSPL  180
CGMLIDFNID DLISDLLNTD KFLQDQINKC DQEMEDGITK LEDLTGEAML ENWTATDHDH  240
HDDPIFQPND DQERVDRLNA ISYFLNSEDG DEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-19239240109B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr031684.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ1268591e-171KJ126859.1 Malus hybrid cultivar MYB6 (MYB6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009340436.10.0PREDICTED: myb-related protein 308-like
TrEMBLA0A498HXA70.0A0A498HXA7_MALDO; Uncharacterized protein
STRINGXP_009340436.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1893346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.13e-41MYB family protein