PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr031687.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 187aa    MW: 21461.8 Da    PI: 7.6272
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr031687.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74e-163779145
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     rg+ ++eE++l+++++k+lG++ W++Ia +++ gRt++++k++w+
      Pbr031687.1 37 RGNISPEEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNFWN 79
                     7999******************.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.716131IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.3E-111743IPR009057Homeodomain-like
SuperFamilySSF466898.77E-211787IPR009057Homeodomain-like
PROSITE profilePS5129424.4773286IPR017930Myb domain
SMARTSM007177.6E-153684IPR001005SANT/Myb domain
PfamPF002491.5E-143779IPR001005SANT/Myb domain
CDDcd001676.64E-124179No hitNo description
Gene3DG3DSA:1.10.10.601.2E-204481IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MEKENGDMLL KKLVRLNRSG KSCRLRWLNY LKPDVKRGNI SPEEEDLIIR LHKLLGNRWS  60
LIAGRLPGRT DNEIKNFWNI SLSKRIQEER PRRVTNSSQA PNDGDNRDQL NNYCSNPSKD  120
DDDQSNPVKS NPVVPSDISG NRDQNSSLSF VRDFDSYIHG HSHEAEINGF RNYMVDDLNF  180
VGHDQV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A1e-1938618103MYB3
3zqc_D1e-1938618103MYB3
3zqc_G1e-1938618103MYB3
3zqc_J1e-1938618103MYB3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr031687.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8934093e-82KT893409.1 Prunus persica cultivar Jinliuzaohong r2r3-myb transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009340476.11e-123PREDICTED: transcription factor MYB114-like
TrEMBLA0A498HVH41e-103A0A498HVH4_MALDO; Uncharacterized protein
STRINGXP_009340476.11e-122(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1785547
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.15e-38myb domain protein 66