PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr031731.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 72aa    MW: 7691.84 Da    PI: 11.6959
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr031731.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-05727323
                 ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                 C++C+k+Fs+   +  H+r+H
  Pbr031731.1  7 CKICNKRFSNGKAMGGHMRSH 27
                 *******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.35E-6232No hitNo description
Gene3DG3DSA:3.30.160.601.7E-4228IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.6E-10429IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.138532IPR007087Zinc finger, C2H2
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 72 aa     Download sequence    Send to blast
MEKHRICKIC NKRFSNGKAM GGHMRSHLAK LPLPPKPQSP QQQQHHPTRT RQASSPSEAA  60
VAAAAAASPT Q*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr031731.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008234415.11e-20PREDICTED: zinc finger protein ZAT9
TrEMBLA0A2N9ECY11e-17A0A2N9ECY1_FAGSY; Uncharacterized protein
STRINGXP_008234415.15e-20(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1731457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61470.13e-07C2H2-like zinc finger protein