PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr031829.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GATA
Protein Properties Length: 269aa    MW: 29425.6 Da    PI: 6.0328
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr031829.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA498.3e-16224259134
         GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                  C +Cgt +  Tp++Rrgpdg++tLCnaCGl+++ k 
  Pbr031829.1 224 CLHCGTNEkcTPMMRRGPDGPRTLCNACGLMWANKA 259
                  99******************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.37480115IPR010399Tify domain
SMARTSM009793.4E-1180115IPR010399Tify domain
PfamPF062005.2E-1285114IPR010399Tify domain
PROSITE profilePS5101713.225148190IPR010402CCT domain
PfamPF062032.3E-15148190IPR010402CCT domain
SMARTSM004011.9E-6218263IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.7E-10220258No hitNo description
Gene3DG3DSA:3.30.50.105.6E-13223258IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.28E-12223258No hitNo description
PfamPF003201.7E-13224260IPR000679Zinc finger, GATA-type
PROSITE patternPS003440224251IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MDNISGGDAP MHMSDEVHLQ YMQEHEHHQG LHQMSNGNGV ADDHDDGSGA DTGGAELSEV  60
HVQSEPVNLS DTRSGMVDHS SNNGDQLTLS FQGQVFVFDS VSPEKVQAVL LLLGGHEVPP  120
GMPAVPVTTQ HDNRALTSIP QRLSVPQRLA SLIRFREKRK ERNFDKKIRY TVRKEVALRM  180
QRKKGQFTSS KPNSDDSASA ITSWGSNENL DQDANGSIPQ EAVCLHCGTN EKCTPMMRRG  240
PDGPRTLCNA CGLMWANKAH DGDDFWNG*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr031829.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009340523.10.0PREDICTED: GATA transcription factor 28-like
RefseqXP_009340524.10.0PREDICTED: GATA transcription factor 28-like
RefseqXP_009340525.10.0PREDICTED: GATA transcription factor 28-like
RefseqXP_009340527.10.0PREDICTED: GATA transcription factor 28-like
RefseqXP_009340528.10.0PREDICTED: GATA transcription factor 28-like
SwissprotQ8H1G01e-100GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A498J0271e-171A0A498J027_MALDO; Uncharacterized protein
STRINGXP_009340523.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF136512325
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.21e-104ZIM-like 1