PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr032057.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family MYB_related
Protein Properties Length: 77aa    MW: 8751.86 Da    PI: 8.954
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr032057.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.16.2e-111054345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+   +++ +a +++ ++   +W ++ar +g g++++++k ++ 
      Pbr032057.1 10 SWTPKQNKQFEKALALYDKDtpdRWQKVARAVG-GKSAEEVKRHYE 54
                     7********************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.428661IPR017884SANT domain
SMARTSM007171.3E-8759IPR001005SANT/Myb domain
SuperFamilySSF466891.17E-13965IPR009057Homeodomain-like
CDDcd001671.95E-71057No hitNo description
PfamPF002491.1E-81054IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-61063IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 77 aa     Download sequence    Send to blast
MMASNSLSSS WTPKQNKQFE KALALYDKDT PDRWQKVARA VGGKSAEEVK RHYELLIEDV  60
KHIESGRVPF PDYRGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-32174174RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr032057.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009340740.13e-51PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1735e-33RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A314XX843e-43A0A314XX84_PRUYE; Protein RADIALIS-like 4
STRINGXP_009340740.11e-50(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-35RAD-like 6