PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr032194.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C3H
Protein Properties Length: 127aa    MW: 14654.9 Da    PI: 10.2429
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr032194.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH44.23.2e-144973226
                 -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                 ktelC+ + +tGtC+y d+C+FaHg
  Pbr032194.1 49 KTELCNKWEETGTCPYRDNCQFAHG 73
                 9***********************9 PP
2zf-CCCH283.7e-0986111126
                  --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                  ykt lCr  +++G C+yG rC+F H+
  Pbr032194.1  86 YKTQLCRMVLAGGACPYGHRCHFRHS 111
                  9**********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.104.5E-184380IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.36E-114479IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-74774IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3054775IPR000571Zinc finger, CCCH-type
PfamPF006427.8E-104973IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.15E-1081116IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.9E-1481114IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-585112IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.13685113IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-686111IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MERNRFIDAD RISLPKSISV RSSNRPRVPS VSRPMTQSQM KVFNQGMLKT ELCNKWEETG  60
TCPYRDNCQF AHGVRELRPV MRHPRYKTQL CRMVLAGGAC PYGHRCHFRH SLTEQEKLQL  120
AVSDSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A2e-2349114570Butyrate response factor 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr032194.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009344133.18e-92PREDICTED: zinc finger CCCH domain-containing protein 14-like
RefseqXP_018499532.12e-92PREDICTED: zinc finger CCCH domain-containing protein 15-like
SwissprotQ9C9F54e-49C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A498HHL76e-86A0A498HHL7_MALDO; Uncharacterized protein
STRINGXP_009341326.17e-92(Pyrus x bretschneideri)
STRINGXP_009344133.13e-91(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27783369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.26e-49C3H family protein