PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr032225.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 203aa    MW: 23232.4 Da    PI: 9.2199
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr032225.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM128.35.9e-40201472128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                   pGf F+Ptde lv++yLk+k+eg++ ++ +vi+e+d++k+eP dLp    + + kew+fFs+ d ky +g+r nr+t++g+ k tgkd+e+ ++ ++
  Pbr032225.1  20 LPGFGFSPTDELLVSYYLKNKIEGTDSHFRHVIPEIDVCKYEPCDLPaFFPEVHGKEWFFFSRLDYKY-NGTRCNRVTDQGFYKITGKDREIRAEeSK 116
                  59***************************999***************545556889***********9.79**********************98566 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  +++g k++L+fy+ r pk++kt+Wv+hey+l
  Pbr032225.1 117 AVIGKKRILTFYERRLPKSKKTNWVVHEYNL 147
                  779**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.89E-4315168IPR003441NAC domain
PROSITE profilePS5100542.8419170IPR003441NAC domain
PfamPF023654.7E-2021147IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MSSSVAPEEG DAVRVNVSRL PGFGFSPTDE LLVSYYLKNK IEGTDSHFRH VIPEIDVCKY  60
EPCDLPAFFP EVHGKEWFFF SRLDYKYNGT RCNRVTDQGF YKITGKDREI RAEESKAVIG  120
KKRILTFYER RLPKSKKTNW VVHEYNLTET KVSSKPTKQM NFVLWRIKNM SGSYKKPKGD  180
PIHGELADTG ATSEDYQAAV VM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-3121761171NO APICAL MERISTEM PROTEIN
1ut4_B5e-3121761171NO APICAL MERISTEM PROTEIN
1ut7_A5e-3121761171NO APICAL MERISTEM PROTEIN
1ut7_B5e-3121761171NO APICAL MERISTEM PROTEIN
4dul_A5e-3121761171NAC domain-containing protein 19
4dul_B5e-3121761171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr032225.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018499419.11e-149PREDICTED: LOW QUALITY PROTEIN: protein NTM1-like 9
TrEMBLA0A498KME31e-125A0A498KME3_MALDO; Uncharacterized protein
STRINGXP_008354053.11e-141(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13710524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.11e-40NAC transcription factor-like 9