PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr032226.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 234aa    MW: 26668.1 Da    PI: 7.0317
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr032226.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1263e-39211492128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                   p +rF+Ptde lv++yL+ k++g++  + ++i+e+d++k+eP dLp    + + kew+fFs+ d+ky+++ r +r+t++g+ k tg+d+e+ ++ ++
  Pbr032226.1  21 LPSVRFNPTDELLVSYYLRSKIQGTDSLFRHTIPEIDVCKYEPCDLPaFFPEVHGKEWFFFSRLDRKYNNSLRCKRVTDQGFYKITGRDREIRAEeSK 118
                  6899**********************888788***************545556889*************************************98566 PP

          NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  +++g k++L+fy+gr +k+++tdWv+hey+l
  Pbr032226.1 119 AVIGKKRILTFYEGRGSKAKRTDWVVHEYSL 149
                  779**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-4413172IPR003441NAC domain
PROSITE profilePS5100543.83120172IPR003441NAC domain
PfamPF023651.2E-1822149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MNSGSITTEE GNAVHANVIL LPSVRFNPTD ELLVSYYLRS KIQGTDSLFR HTIPEIDVCK  60
YEPCDLPAFF PEVHGKEWFF FSRLDRKYNN SLRCKRVTDQ GFYKITGRDR EIRAEESKAV  120
IGKKRILTFY EGRGSKAKRT DWVVHEYSLT ETEVSSKPAK QMDFVLWRLK NKSASYKKPK  180
GDPIRGELAD SGANSEDDQA AVSDVIAEPV EHLGYFFDNL QIETLISSTY CFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-292017817171NO APICAL MERISTEM PROTEIN
1ut4_B3e-292017817171NO APICAL MERISTEM PROTEIN
1ut7_A3e-292017817171NO APICAL MERISTEM PROTEIN
1ut7_B3e-292017817171NO APICAL MERISTEM PROTEIN
3swm_A4e-292017820174NAC domain-containing protein 19
3swm_B4e-292017820174NAC domain-containing protein 19
3swm_C4e-292017820174NAC domain-containing protein 19
3swm_D4e-292017820174NAC domain-containing protein 19
3swp_A4e-292017820174NAC domain-containing protein 19
3swp_B4e-292017820174NAC domain-containing protein 19
3swp_C4e-292017820174NAC domain-containing protein 19
3swp_D4e-292017820174NAC domain-containing protein 19
4dul_A3e-292017817171NAC domain-containing protein 19
4dul_B3e-292017817171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr032226.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF9687651e-148HF968765.1 Malus x domestica metacontig of the Co-Gene region, cultivar Procats28, columnar allele.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009340829.11e-175PREDICTED: protein NTM1-like 9
TrEMBLA0A498KIQ71e-123A0A498KIQ7_MALDO; Uncharacterized protein
STRINGXP_009340829.11e-175(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13710524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.14e-40NAC transcription factor-like 9