PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr032235.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 224aa    MW: 25533.6 Da    PI: 5.6793
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr032235.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1324.3e-41291551126
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                  lp+Gf F+Pt eel+ +yL+ k++g++  +++vi+e++i+++eP+dLp+   ++++++ewyfFs+ +k++  +++++ratk+g+Wk tg++k+v+++ 
  Pbr032235.1  29 LPVGFGFRPTGEELIGYYLQMKLKGTDYVFSDVIPEINICDHEPRDLPElsPIDSTNQEWYFFSTYKKNS--KNQTERATKEGFWKITGTQKPVKTEd 124
                  799***************************9****************95346777889******998865..569********************986 PP

          NAM  96 kgelvglkktLvfykgrapkgektdWvmhey 126
                  +++++g k++L+fy+gr ++++ktdWvmhey
  Pbr032235.1 125 QRTVIGEKRILTFYQGRVRNSQKTDWVMHEY 155
                  66779************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-4222176IPR003441NAC domain
PROSITE profilePS5100543.14629176IPR003441NAC domain
PfamPF023655.6E-2330155IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MAANGIHFTR VGDMVFPVGF HWTRVGDVLP VGFGFRPTGE ELIGYYLQMK LKGTDYVFSD  60
VIPEINICDH EPRDLPELSP IDSTNQEWYF FSTYKKNSKN QTERATKEGF WKITGTQKPV  120
KTEDQRTVIG EKRILTFYQG RVRNSQKTDW VMHEYIPQTN PNDNQRDLVV CCVKKKSGEN  180
VDAANCHEGE SSTNNNASDF GNQQLLAPRM DIEEVRMLNT NAD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-222917617165NO APICAL MERISTEM PROTEIN
1ut4_B1e-222917617165NO APICAL MERISTEM PROTEIN
1ut7_A1e-222917617165NO APICAL MERISTEM PROTEIN
1ut7_B1e-222917617165NO APICAL MERISTEM PROTEIN
4dul_A1e-222917617165NAC domain-containing protein 19
4dul_B1e-222917617165NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr032235.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018499420.11e-162PREDICTED: NAC domain-containing protein 14-like
TrEMBLA0A498KJI11e-113A0A498KJI1_MALDO; Uncharacterized protein
STRINGXP_009340837.11e-147(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13478522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.11e-37NAC 014