PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr032385.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 231aa    MW: 25762.4 Da    PI: 8.3934
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr032385.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS46.85.2e-15131217188
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdg..dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                  l++lL+ cA+av+++ ++  ++lL+++++++s  +  +p+qRla+yf+ +L+ar+a+s+ ++yk l ++++s    +++l+a+ l+  v+
  Pbr032385.1 131 LRTLLTLCARAVAANGKRTHNELLKHIRQHSSLMAmgNPLQRLAHYFADGLEARMAGSGAQIYKDLVSKPAS---AADVLKAYYLYLVVC 217
                  5789**************************98654449*******************************999...788888887776555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098512.916105230IPR005202Transcription factor GRAS
PfamPF035141.8E-12131217IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MEEKTEIYHE PAALEAAELS FYELLGEKHS LSPPCDMTSY ADQNNESRDE CHPSHSSDYN  60
TTSWIGFGVV IRVSTNPCMF LLSPILCHSM PHQMEVNGTI KNVQQHGQSN EASGRKGRGK  120
KWGCKKEVVD LRTLLTLCAR AVAANGKRTH NELLKHIRQH SSLMAMGNPL QRLAHYFADG  180
LEARMAGSGA QIYKDLVSKP ASAADVLKAY YLYLVVCRLR GYRFCSQTRQ *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr032385.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008233638.13e-48PREDICTED: scarecrow-like protein 14
TrEMBLM5X4261e-45M5X426_PRUPE; Uncharacterized protein
STRINGXP_008233638.11e-47(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.18e-30SCARECROW-like 14