PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr032608.1
Organism
Pyrus bretschneideri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 452aa    MW: 50282.9 Da    PI: 7.4644
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr032608.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.6e-19207257256
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                   y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+ge
  Pbr032608.1 207 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKLRGE 257
                  59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.16E-34206266No hitNo description
SMARTSM003801.5E-40207270IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-23207265IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-32207265IPR001471AP2/ERF domain
PROSITE profilePS5103222.998207264IPR001471AP2/ERF domain
PRINTSPR003678.0E-11208219IPR001471AP2/ERF domain
PfamPF008472.7E-12208257IPR001471AP2/ERF domain
PRINTSPR003678.0E-11230246IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MSSPKKSGKS KMETSGEWEA NKDKELDFSF ERPPWKPGFS EASTASNRPL KKVKSPERQD  60
PIQASPSLAH HQTPSPIIAP HPSSSSSKIV FPFSFDGSQQ PMMQFPHPFN PTNLPMFPSP  120
IQQQQQQNPQ QMISFESHQQ QQQQGMSYPS PFVGESVSWQ QHQKMLQHWS DALNLSPRGR  180
VMMMNRLGPD GRPMLRPPAM PYNTTKLYRG VRQRHWGKWV AEIRLPRNRT RLWLGTFDTA  240
EDAAMAYDRE AFKLRGENAR LNFPELFLNK DKSDVSVSSA PGSATISPPR HEGSKPTGHR  300
KQPQKIKRSA SNIEAMPPPP IPHTQEENST DNDSGLESSE AKAIDEVEAN TDGAGGGSSQ  360
QKEIVWGDMA EDWLNAIPAG WGPGSPVWDD LDTNNSLLLQ SDLPFTNPNQ QDYNININPQ  420
QAIQNSGSGS GSGSSSSSSY PMKNLFWKDQ N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-20206264160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr032608.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6698220.0JQ669822.1 Malus x domestica dehydration-responsive element-binding protein (DREB6) (DREB6-1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009357820.10.0PREDICTED: ethylene-responsive transcription factor ERF053-like
TrEMBLA0A1P8VHX00.0A0A1P8VHX0_9ROSA; DREB6.10
STRINGXP_009357820.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-58ERF family protein